util.cc File Reference

#include <protocols/stepwise/modeler/working_parameters/util.hh>
#include <protocols/stepwise/modeler/working_parameters/StepWiseWorkingParameters.hh>
#include <protocols/stepwise/modeler/protein/util.hh>
#include <protocols/stepwise/legacy/modeler/rna/StepWiseRNA_WorkingParametersSetup.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/modeler/movemap/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <core/pose/toolbox/AtomLevelDomainMap.hh>
#include <protocols/stepwise/sampler/rna/util.hh>
#include <core/chemical/VariantType.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/full_model_info/FullModelParameters.hh>
#include <core/pose/full_model_info/util.hh>
#include <core/pose/subpose_manipulation_util.hh>
#include <core/pose/util.hh>
#include <utility/tools/make_vector1.hh>
#include <ObjexxFCL/string.functions.hh>
#include <utility/string_util.hh>
#include <utility/stream_util.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::modeler
	protocols::stepwise::modeler::working_parameters

Functions
static basic::Tracer	TR ("protocols.stepwise.modeler.working_parameters.util")
StepWiseWorkingParametersOP	protocols::stepwise::modeler::working_parameters::setup_working_parameters_for_swa (utility::vector1< core::Size > const &moving_res_list, pose::Pose const &pose, pose::PoseCOP native_pose, utility::vector1< core::Size > const &user_defined_bridge_res, utility::vector1< core::Size > const &working_minimize_res)
StepWiseWorkingParametersOP	protocols::stepwise::modeler::working_parameters::setup_working_parameters_explicit (core::Size const rebuild_res, pose::Pose const &pose, pose::PoseCOP native_pose)
bool	protocols::stepwise::modeler::working_parameters::figure_out_rebuild_bulge_mode (pose::Pose const &pose, core::Size const rebuild_res)
bool	protocols::stepwise::modeler::working_parameters::figure_out_sample_both_sugar_base_rotamer (pose::Pose const &pose, bool const floating_base, core::Size const rebuild_suite)

Function Documentation

static basic::Tracer TR ( "protocols.stepwise.modeler.working_parameters.util"  )

static

Referenced by protocols::stepwise::modeler::working_parameters::setup_working_parameters_explicit().