| actual_cycles() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| actual_cycles_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| adjust_residue_to_minimize_deviation(core::pose::Pose &pose, core::pose::Pose const &starting_pose, core::uint const seqpos, ChainDirection const direction, core::Real const max_per_move_torsion_delta, core::Real const max_total_torsion_delta) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | privatevirtual |
| apply(core::pose::Pose &pose) override | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | virtual |
| average_change_in_rama_score_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| average_change_in_torsion_angle_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| BAD_SCORE | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | privatestatic |
| calculate_ccd_angle(core::pose::Pose const &pose, core::uint const pos, core::uint const torsion, ChainDirection const direction) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| CCDLoopClosureMover() | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| CCDLoopClosureMover(CCDLoopClosureMover const &object_to_copy) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| CCDLoopClosureMover(protocols::loops::Loop const &loop) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| CCDLoopClosureMover(protocols::loops::Loop const &loop, core::kinematics::MoveMapCOP mm) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| check_rama_scores() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| check_rama_scores(bool setting) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| check_rama_scores_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | virtual |
| close_loop_in_single_direction(core::pose::Pose &pose, core::pose::Pose const &starting_pose, ChainDirection const direction) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| compute_closure_metrics(core::pose::Pose const &pose, core::pose::Pose const &starting_pose) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| copy_data(CCDLoopClosureMover &to, CCDLoopClosureMover const &from) const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| create() | protocols::moves::Mover | virtual |
| deviation() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| deviation_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| fresh_instance() const override | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_anchors(core::conformation::Residue const &residue) const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_maximum_torsion_deltas_for_residue(core::pose::Pose const &pose, core::uint const seqpos, core::Real &per_move_allowed_delta, core::Real &total_allowed_delta) const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | privatevirtual |
| get_name() const override | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_torsion_axis(core::pose::Pose const &pose, core::uint const seqpos, core::uint const torsion_num, core::Vector &axis_atom_coords, core::Vector &axis_unit_vector) const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| get_type() const | protocols::moves::Mover | inline |
| index_pair_in_range(core::uint &pos, core::uint &atom, core::Size const n_mainchain_atoms) const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init(protocols::loops::Loop const &loop, core::kinematics::MoveMapCOP movemap) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| init_options() | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| loop() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| loop(protocols::loops::Loop new_loop) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| loop_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| MALARKEY | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | privatestatic |
| max_cycles() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| max_cycles(core::Size input_ccd_cycles) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| max_cycles_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| max_per_move_torsion_delta_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| max_per_move_torsion_delta_per_residue(core::Angle input_max_delta_helix, core::Angle input_max_delta_strand, core::Angle input_max_delta_coil) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| max_per_move_torsion_delta_per_residue(SecondaryStructureType secstruct) const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| max_per_move_torsion_delta_per_residue(char secstruct) const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| max_total_torsion_delta_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| max_total_torsion_delta_per_residue(SecondaryStructureType secstruct) const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| max_total_torsion_delta_per_residue(char secstruct) const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| max_total_torsion_delta_per_residue(core::Angle input_max_delta_helix, core::Angle input_max_delta_strand, core::Angle input_max_delta_coil) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| movemap() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| movemap(core::kinematics::MoveMapCOP new_movemap) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| movemap_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(CCDLoopClosureMover const &object_to_copy) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &) override | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | static |
| rama() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| rama_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | mutableprivate |
| rama_delta() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| register_options() | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | static |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| sec_struc_char_to_enum_map() | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | privatestatic |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| set_verbose(bool setting) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| show(std::ostream &output=std::cout) const override | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | virtual |
| starting_rama_scores_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| STEP_SIZE | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | privatestatic |
| Strings typedef | protocols::moves::Mover | |
| success() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| tolerance() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| tolerance(core::Real input_tolerance) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| tolerance_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| torsion_delta() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| use_rama_2B() const | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| use_rama_2B(bool setting) | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | inline |
| use_rama_2b_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| verbose_ | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | private |
| ~CCDLoopClosureMover() override | protocols::loops::loop_closure::ccd::CCDLoopClosureMover | |
1.8.7