protocols::symmetric_docking::SymDockProtocol Member List

This is the complete list of members for protocols::symmetric_docking::SymDockProtocol, including all inherited members.

apply(core::pose::Pose &pose) override	protocols::symmetric_docking::SymDockProtocol	virtual
autofoldtree_	protocols::symmetric_docking::SymDockProtocol	private
calc_CAPRI_rank(core::Real const Irmsd, core::Real const Lrmsd, core::Real const Fnat)	protocols::symmetric_docking::SymDockProtocol
calc_fnat(core::pose::Pose &pose, core::scoring::ScoreFunctionOP dock_scorefxn)	protocols::symmetric_docking::SymDockProtocol
calc_interaction_energy(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol
calc_Irms(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol
calc_res_contact(core::conformation::ResidueOP const rsd1, core::conformation::ResidueOP const rsd2, core::Real const dist_cutoff)	protocols::symmetric_docking::SymDockProtocol
calc_rms(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol
classic_mcm_protocol(core::pose::Pose &pose, core::scoring::ScoreFunctionOP scorefxn, protocols::moves::MonteCarloOP monteCarlo, core::Size num_cycles, core::Size repack_every_Nth) const	protocols::symmetric_docking::SymDockProtocol	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::symmetric_docking::SymDockProtocol	virtual
create()	protocols::moves::Mover	virtual
design(bool const des)	protocols::symmetric_docking::SymDockProtocol
design() const	protocols::symmetric_docking::SymDockProtocol
design_	protocols::symmetric_docking::SymDockProtocol	private
dock_ppk_	protocols::symmetric_docking::SymDockProtocol	private
docking_high_	protocols::symmetric_docking::SymDockProtocol	private
docking_highres_filter(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol
docking_low_	protocols::symmetric_docking::SymDockProtocol	private
docking_lowres_filter(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol
docking_score_high_	protocols::symmetric_docking::SymDockProtocol	private
docking_score_high_min_	protocols::symmetric_docking::SymDockProtocol	private
docking_score_low_	protocols::symmetric_docking::SymDockProtocol	private
docking_score_pack_	protocols::symmetric_docking::SymDockProtocol	private
fresh_instance() const	protocols::moves::Mover	virtual
fullatom_	protocols::symmetric_docking::SymDockProtocol	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::symmetric_docking::SymDockProtocol	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
hurry(bool const hurry)	protocols::symmetric_docking::SymDockProtocol
hurry_	protocols::symmetric_docking::SymDockProtocol	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
init_task_factory_	protocols::symmetric_docking::SymDockProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
local_refine_	protocols::symmetric_docking::SymDockProtocol	private
make_dockmcm_mover(core::pose::Pose const &pose, protocols::moves::MoverOP repack_mover, protocols::moves::MoverOP rigbod_mover, core::kinematics::MoveMapOP movemap, core::scoring::ScoreFunctionOP scorefxn, protocols::moves::MonteCarloOP monteCarlo) const	protocols::symmetric_docking::SymDockProtocol	private
max_repeats_	protocols::symmetric_docking::SymDockProtocol	private
mc_	protocols::symmetric_docking::SymDockProtocol	private
movable_jumps_	protocols::symmetric_docking::SymDockProtocol	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::symmetric_docking::SymDockProtocol	static
name()	protocols::moves::Mover	inlinestatic
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) override	protocols::symmetric_docking::SymDockProtocol	virtual
passed_highres_filter_	protocols::symmetric_docking::SymDockProtocol	private
passed_lowres_filter_	protocols::symmetric_docking::SymDockProtocol	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::symmetric_docking::SymDockProtocol	static
recover_sidechains(core::pose::Pose &pose, const core::pose::Pose &native_pose)	protocols::symmetric_docking::SymDockProtocol
register_options()	protocols::symmetric_docking::SymDockProtocol
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
rtmin_	protocols::symmetric_docking::SymDockProtocol	private
sc_min_	protocols::symmetric_docking::SymDockProtocol	private
score_map_	protocols::symmetric_docking::SymDockProtocol	private
score_only(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_default()	protocols::symmetric_docking::SymDockProtocol
set_dock_ppk(bool dock_ppk_in)	protocols::symmetric_docking::SymDockProtocol
set_dock_rtmin(bool dock_rtmin_in)	protocols::symmetric_docking::SymDockProtocol
set_fullatom(bool const fullatom_in)	protocols::symmetric_docking::SymDockProtocol
set_highres_scorefxn(core::scoring::ScoreFunctionOP docking_score_high_in)	protocols::symmetric_docking::SymDockProtocol
set_highres_scorefxn(core::scoring::ScoreFunctionOP docking_score_high_in, core::scoring::ScoreFunctionOP docking_score_pack_in)	protocols::symmetric_docking::SymDockProtocol
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_local_refine(bool const local_refine_in)	protocols::symmetric_docking::SymDockProtocol
set_lowres_scorefxn(core::scoring::ScoreFunctionOP docking_score_low_in)	protocols::symmetric_docking::SymDockProtocol
set_max_repeats(core::Size const max_repeats_in)	protocols::symmetric_docking::SymDockProtocol
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_sc_min(bool sc_min_in)	protocols::symmetric_docking::SymDockProtocol
set_type(std::string const &setting)	protocols::moves::Mover	inline
set_view(bool view_in)	protocols::symmetric_docking::SymDockProtocol
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Strings typedef	protocols::moves::Mover
SymDockProtocol()	protocols::symmetric_docking::SymDockProtocol
SymDockProtocol(bool const fullatom, bool const local_refine, bool const view=false)	protocols::symmetric_docking::SymDockProtocol
SymDockProtocol(bool const fullatom, bool const local_refine, bool const view, core::scoring::ScoreFunctionOP docking_score_low, core::scoring::ScoreFunctionOP docking_score_high)	protocols::symmetric_docking::SymDockProtocol
SymmetricConformation typedef	protocols::symmetric_docking::SymDockProtocol
SymmetryInfo typedef	protocols::symmetric_docking::SymDockProtocol
TagCOP typedef	protocols::moves::Mover
task_factory(core::pack::task::TaskFactoryOP task_factory)	protocols::symmetric_docking::SymDockProtocol
task_factory() const	protocols::symmetric_docking::SymDockProtocol
task_factory()	protocols::symmetric_docking::SymDockProtocol
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
view_	protocols::symmetric_docking::SymDockProtocol	private
~SymDockProtocol() override	protocols::symmetric_docking::SymDockProtocol