ProfileScoreSubMatrix.hh File Reference

scores a fragment by substitution matrix (e.g. Blosum62) profile score More...

#include <core/types.hh>
#include <protocols/frag_picker/scores/CachingScoringMethod.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.fwd.hh>
#include <utility/vector1.hh>

Classes
class	protocols::frag_picker::scores::ProfileScoreSubMatrix
	a fragment candidate More...
class	protocols::frag_picker::scores::MakeProfileScoreSubMatrix

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frag_picker
	protocols::frag_picker::scores

Detailed Description

scores a fragment by substitution matrix (e.g. Blosum62) profile score

Author

Dan Kulp (dwkul.nosp@m.p@gm.nosp@m.ail.c.nosp@m.om), based on code from Dominik Gront (dgron.nosp@m.t@ch.nosp@m.em.uw.nosp@m..edu.nosp@m..pl)