protocols::ligand_docking::ga_ligand_dock::GAOptimizer Member List

This is the complete list of members for protocols::ligand_docking::ga_ligand_dock::GAOptimizer, including all inherited members.

favor_native_	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
GAOptimizer(GridScorerOP grid)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer
initialize_rotamer_set_and_scores(LigandConformer lig)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
max_rot_cumulative_prob_	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
nativegene_	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
next_generation(LigandConformers const &genes, LigandConformers &genes_new, core::Size, core::Real)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
optimize_generation(LigandConformers &genes, utility::vector1< core::Real > const &ramping)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer
protocol_	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
rot_energy_cutoff_	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
rotamer_data_	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
rotamer_energies_	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
run(LigandConformers &genes)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer
scorefxn_	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
set_favor_native(core::Real newval)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	inline
set_max_rot_cumulative_prob(core::Real newval)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	inline
set_native(LigandConformer const native)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	inline
set_protocol(utility::vector1< GADockStageParams > const &protocol_in)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	inline
set_rot_energy_cutoff(core::Real newval)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	inline
show_status(LigandConformers &genes, std::string comment="", bool calculate_native_rmsd=true, bool verbose=false)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer
update_pool(LigandConformers &genes, LigandConformers &genes_new, core::Size, core::Real)	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
update_tags(LigandConformers &genes) const	protocols::ligand_docking::ga_ligand_dock::GAOptimizer	private
~GAOptimizer()	protocols::ligand_docking::ga_ligand_dock::GAOptimizer