This is the complete list of members for protocols::evolution::AlignmentGapInserter, including all inherited members.

alignment_file() const	protocols::evolution::AlignmentGapInserter	inline
alignment_file(std::string const &a)	protocols::evolution::AlignmentGapInserter	inline
alignment_file_	protocols::evolution::AlignmentGapInserter	private
AlignmentGapInserter()	protocols::evolution::AlignmentGapInserter
apply(core::pose::Pose const &p) const override	protocols::evolution::AlignmentGapInserter	virtual
available_AAs_file() const	protocols::evolution::AlignmentGapInserter	inline
available_AAs_file(std::string const &a)	protocols::evolution::AlignmentGapInserter	inline
available_AAs_file_	protocols::evolution::AlignmentGapInserter	private
class_name()	protocols::evolution::AlignmentGapInserter	static
cleaned_alignment_file() const	protocols::evolution::AlignmentGapInserter	inline
cleaned_alignment_file(std::string const &a)	protocols::evolution::AlignmentGapInserter	inline
cleaned_alignment_file_	protocols::evolution::AlignmentGapInserter	private
clear()	protocols::filters::Filter	inlinevirtual
clone() const override	protocols::evolution::AlignmentGapInserter	inlinevirtual
Filter()	protocols::filters::Filter
Filter(std::string const &)	protocols::filters::Filter
Filter(Filter const &)	protocols::filters::Filter
find_char_location_in_string(std::string const &string, char const findIt) const	protocols::evolution::AlignmentGapInserter
fresh_instance() const override	protocols::evolution::AlignmentGapInserter	inlinevirtual
get_type() const	protocols::filters::Filter	inlinevirtual
get_user_defined_name() const	protocols::filters::Filter	inline
indel_motif_radius() const	protocols::evolution::AlignmentGapInserter	inline
indel_motif_radius(core::Size const &r)	protocols::evolution::AlignmentGapInserter	inline
indel_motif_radius_	protocols::evolution::AlignmentGapInserter	private
loop_seqid_thresholds() const	protocols::evolution::AlignmentGapInserter	inline
loop_seqid_thresholds(utility::vector1< core::Real > const &v)	protocols::evolution::AlignmentGapInserter	inline
loop_seqid_thresholds_	protocols::evolution::AlignmentGapInserter	private
max_score_diffs() const	protocols::evolution::AlignmentGapInserter	inline
max_score_diffs(utility::vector1< core::Real > const &v)	protocols::evolution::AlignmentGapInserter	inline
max_score_diffs_	protocols::evolution::AlignmentGapInserter	private
name() const override	protocols::evolution::AlignmentGapInserter	virtual
nbr_e_threshold() const	protocols::evolution::AlignmentGapInserter	inline
nbr_e_threshold(core::Real const &t)	protocols::evolution::AlignmentGapInserter	inline
nbr_e_threshold_	protocols::evolution::AlignmentGapInserter	private
only_clean_seq_num() const	protocols::evolution::AlignmentGapInserter	inline
only_clean_seq_num(core::Size const &t)	protocols::evolution::AlignmentGapInserter	inline
only_clean_seq_num_	protocols::evolution::AlignmentGapInserter	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override	protocols::evolution::AlignmentGapInserter	virtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::filters::Filter	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::evolution::AlignmentGapInserter	static
report(std::ostream &out, core::pose::Pose const &pose) const override	protocols::evolution::AlignmentGapInserter	virtual
report_sm(core::pose::Pose const &pose) const override	protocols::evolution::AlignmentGapInserter	virtual
score(core::pose::Pose &pose)	protocols::filters::Filter	virtual
scorefxn() const	protocols::evolution::AlignmentGapInserter	inline
scorefxn(core::scoring::ScoreFunctionOP scorefxn)	protocols::evolution::AlignmentGapInserter	inline
scorefxn_	protocols::evolution::AlignmentGapInserter	private
scorename_	protocols::filters::Filter	protected
set_user_defined_name(std::string const &name)	protocols::filters::Filter	inline
~AlignmentGapInserter() override	protocols::evolution::AlignmentGapInserter
~Filter() override	protocols::filters::Filter