Rosetta  2021.16
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protocols::evolution::AlignmentGapInserter Member List

This is the complete list of members for protocols::evolution::AlignmentGapInserter, including all inherited members.

alignment_file() const protocols::evolution::AlignmentGapInserterinline
alignment_file(std::string const &a)protocols::evolution::AlignmentGapInserterinline
alignment_file_protocols::evolution::AlignmentGapInserterprivate
AlignmentGapInserter()protocols::evolution::AlignmentGapInserter
apply(core::pose::Pose const &p) const overrideprotocols::evolution::AlignmentGapInsertervirtual
available_AAs_file() const protocols::evolution::AlignmentGapInserterinline
available_AAs_file(std::string const &a)protocols::evolution::AlignmentGapInserterinline
available_AAs_file_protocols::evolution::AlignmentGapInserterprivate
class_name()protocols::evolution::AlignmentGapInserterstatic
cleaned_alignment_file() const protocols::evolution::AlignmentGapInserterinline
cleaned_alignment_file(std::string const &a)protocols::evolution::AlignmentGapInserterinline
cleaned_alignment_file_protocols::evolution::AlignmentGapInserterprivate
clear()protocols::filters::Filterinlinevirtual
clone() const overrideprotocols::evolution::AlignmentGapInserterinlinevirtual
Filter()protocols::filters::Filter
Filter(std::string const &)protocols::filters::Filter
Filter(Filter const &)protocols::filters::Filter
find_char_location_in_string(std::string const &string, char const findIt) const protocols::evolution::AlignmentGapInserter
fresh_instance() const overrideprotocols::evolution::AlignmentGapInserterinlinevirtual
get_type() const protocols::filters::Filterinlinevirtual
get_user_defined_name() const protocols::filters::Filterinline
indel_motif_radius() const protocols::evolution::AlignmentGapInserterinline
indel_motif_radius(core::Size const &r)protocols::evolution::AlignmentGapInserterinline
indel_motif_radius_protocols::evolution::AlignmentGapInserterprivate
loop_seqid_thresholds() const protocols::evolution::AlignmentGapInserterinline
loop_seqid_thresholds(utility::vector1< core::Real > const &v)protocols::evolution::AlignmentGapInserterinline
loop_seqid_thresholds_protocols::evolution::AlignmentGapInserterprivate
max_score_diffs() const protocols::evolution::AlignmentGapInserterinline
max_score_diffs(utility::vector1< core::Real > const &v)protocols::evolution::AlignmentGapInserterinline
max_score_diffs_protocols::evolution::AlignmentGapInserterprivate
name() const overrideprotocols::evolution::AlignmentGapInsertervirtual
nbr_e_threshold() const protocols::evolution::AlignmentGapInserterinline
nbr_e_threshold(core::Real const &t)protocols::evolution::AlignmentGapInserterinline
nbr_e_threshold_protocols::evolution::AlignmentGapInserterprivate
only_clean_seq_num() const protocols::evolution::AlignmentGapInserterinline
only_clean_seq_num(core::Size const &t)protocols::evolution::AlignmentGapInserterinline
only_clean_seq_num_protocols::evolution::AlignmentGapInserterprivate
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) overrideprotocols::evolution::AlignmentGapInsertervirtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::filters::Filtervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::evolution::AlignmentGapInserterstatic
report(std::ostream &out, core::pose::Pose const &pose) const overrideprotocols::evolution::AlignmentGapInsertervirtual
report_sm(core::pose::Pose const &pose) const overrideprotocols::evolution::AlignmentGapInsertervirtual
score(core::pose::Pose &pose)protocols::filters::Filtervirtual
scorefxn() const protocols::evolution::AlignmentGapInserterinline
scorefxn(core::scoring::ScoreFunctionOP scorefxn)protocols::evolution::AlignmentGapInserterinline
scorefxn_protocols::evolution::AlignmentGapInserterprivate
scorename_protocols::filters::Filterprotected
set_user_defined_name(std::string const &name)protocols::filters::Filterinline
~AlignmentGapInserter() overrideprotocols::evolution::AlignmentGapInserter
~Filter() overrideprotocols::filters::Filter