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protocols::seeded_abinitio::SeedFoldTree Member List

This is the complete list of members for protocols::seeded_abinitio::SeedFoldTree, including all inherited members.

all_seeds_protocols::seeded_abinitio::SeedFoldTreeprivate
anchor_specified(bool anchor_specified)protocols::seeded_abinitio::SeedFoldTree
anchor_specified()protocols::seeded_abinitio::SeedFoldTree
anchor_specified_protocols::seeded_abinitio::SeedFoldTreeprivate
anchors_protocols::seeded_abinitio::SeedFoldTreeprivate
apply(core::pose::Pose &pose) overrideprotocols::seeded_abinitio::SeedFoldTreevirtual
best_by_ala_scan(core::Size start, core::Size end, core::pose::PoseOP &ts_pose)protocols::seeded_abinitio::SeedFoldTree
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::seeded_abinitio::SeedFoldTreevirtual
create()protocols::moves::Movervirtual
cut_points_protocols::seeded_abinitio::SeedFoldTreeprivate
ddg_based()protocols::seeded_abinitio::SeedFoldTree
ddg_based(bool ddgb)protocols::seeded_abinitio::SeedFoldTree
ddg_based_protocols::seeded_abinitio::SeedFoldTreeprivate
fold_tree(core::kinematics::FoldTreeOP ft)protocols::seeded_abinitio::SeedFoldTree
fold_tree() const protocols::seeded_abinitio::SeedFoldTree
fold_tree_protocols::seeded_abinitio::SeedFoldTreeprivate
folding_vertices_protocols::seeded_abinitio::SeedFoldTreeprivate
fresh_instance() const overrideprotocols::seeded_abinitio::SeedFoldTreevirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_cutpoints()protocols::seeded_abinitio::SeedFoldTree
get_folding_vertices()protocols::seeded_abinitio::SeedFoldTree
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const overrideprotocols::seeded_abinitio::SeedFoldTreevirtual
get_native_pose() const protocols::moves::Mover
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
manual_jump_pairs_protocols::seeded_abinitio::SeedFoldTreeprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::seeded_abinitio::SeedFoldTreestatic
name()protocols::moves::Moverinlinestatic
only_seeds_chain_protocols::seeded_abinitio::SeedFoldTreeprivate
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) overrideprotocols::seeded_abinitio::SeedFoldTreevirtual
pdb_contains_target_protocols::seeded_abinitio::SeedFoldTreeprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::seeded_abinitio::SeedFoldTreestatic
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
scorefxn() const protocols::seeded_abinitio::SeedFoldTree
scorefxn(core::scoring::ScoreFunctionOP scorefxn)protocols::seeded_abinitio::SeedFoldTree
scorefxn_protocols::seeded_abinitio::SeedFoldTreeprivate
SeedFoldTree()protocols::seeded_abinitio::SeedFoldTree
SeedFoldTree(core::kinematics::FoldTreeOP ft)protocols::seeded_abinitio::SeedFoldTree
seeds_only_protocols::seeded_abinitio::SeedFoldTreeprivate
set_anchor_res(utility::vector1< core::Size > anchor)protocols::seeded_abinitio::SeedFoldTree
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_foldtree(core::pose::PoseOP &seed_target_chain, std::string secstr, protocols::loops::Loops &loops, bool protein_not_folded_yet)protocols::seeded_abinitio::SeedFoldTree
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_jumps_manuallyprotocols::seeded_abinitio::SeedFoldTreeprivate
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
target_chain_protocols::seeded_abinitio::SeedFoldTreeprivate
template_pdb_protocols::seeded_abinitio::SeedFoldTreeprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
twochains_protocols::seeded_abinitio::SeedFoldTreeprivate
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
~SeedFoldTree() overrideprotocols::seeded_abinitio::SeedFoldTree