protocols::seeded_abinitio::SeedFoldTree Member List

This is the complete list of members for protocols::seeded_abinitio::SeedFoldTree, including all inherited members.

all_seeds_	protocols::seeded_abinitio::SeedFoldTree	private
anchor_specified(bool anchor_specified)	protocols::seeded_abinitio::SeedFoldTree
anchor_specified()	protocols::seeded_abinitio::SeedFoldTree
anchor_specified_	protocols::seeded_abinitio::SeedFoldTree	private
anchors_	protocols::seeded_abinitio::SeedFoldTree	private
apply(core::pose::Pose &pose) override	protocols::seeded_abinitio::SeedFoldTree	virtual
best_by_ala_scan(core::Size start, core::Size end, core::pose::PoseOP &ts_pose)	protocols::seeded_abinitio::SeedFoldTree
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::seeded_abinitio::SeedFoldTree	virtual
create()	protocols::moves::Mover	virtual
cut_points_	protocols::seeded_abinitio::SeedFoldTree	private
ddg_based()	protocols::seeded_abinitio::SeedFoldTree
ddg_based(bool ddgb)	protocols::seeded_abinitio::SeedFoldTree
ddg_based_	protocols::seeded_abinitio::SeedFoldTree	private
fold_tree(core::kinematics::FoldTreeOP ft)	protocols::seeded_abinitio::SeedFoldTree
fold_tree() const	protocols::seeded_abinitio::SeedFoldTree
fold_tree_	protocols::seeded_abinitio::SeedFoldTree	private
folding_vertices_	protocols::seeded_abinitio::SeedFoldTree	private
fresh_instance() const override	protocols::seeded_abinitio::SeedFoldTree	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_cutpoints()	protocols::seeded_abinitio::SeedFoldTree
get_folding_vertices()	protocols::seeded_abinitio::SeedFoldTree
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::seeded_abinitio::SeedFoldTree	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
manual_jump_pairs_	protocols::seeded_abinitio::SeedFoldTree	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::seeded_abinitio::SeedFoldTree	static
name()	protocols::moves::Mover	inlinestatic
only_seeds_chain_	protocols::seeded_abinitio::SeedFoldTree	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) override	protocols::seeded_abinitio::SeedFoldTree	virtual
pdb_contains_target_	protocols::seeded_abinitio::SeedFoldTree	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::seeded_abinitio::SeedFoldTree	static
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
scorefxn() const	protocols::seeded_abinitio::SeedFoldTree
scorefxn(core::scoring::ScoreFunctionOP scorefxn)	protocols::seeded_abinitio::SeedFoldTree
scorefxn_	protocols::seeded_abinitio::SeedFoldTree	private
SeedFoldTree()	protocols::seeded_abinitio::SeedFoldTree
SeedFoldTree(core::kinematics::FoldTreeOP ft)	protocols::seeded_abinitio::SeedFoldTree
seeds_only_	protocols::seeded_abinitio::SeedFoldTree	private
set_anchor_res(utility::vector1< core::Size > anchor)	protocols::seeded_abinitio::SeedFoldTree
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_foldtree(core::pose::PoseOP &seed_target_chain, std::string secstr, protocols::loops::Loops &loops, bool protein_not_folded_yet)	protocols::seeded_abinitio::SeedFoldTree
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_jumps_manually	protocols::seeded_abinitio::SeedFoldTree	private
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
target_chain_	protocols::seeded_abinitio::SeedFoldTree	private
template_pdb_	protocols::seeded_abinitio::SeedFoldTree	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
twochains_	protocols::seeded_abinitio::SeedFoldTree	private
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
~SeedFoldTree() override	protocols::seeded_abinitio::SeedFoldTree