| apply(core::pose::Pose &pose) override | protocols::pose_creation::MergePDBatOverlapMover | virtual |
| apply_helper(core::pose::Pose &pose) | protocols::pose_creation::MergePDBatOverlapMover | |
| assign_seq(Pose &pose, char residue_type, core::Size position) | protocols::pose_creation::MergePDBatOverlapMover | |
| attach_pose_ | protocols::pose_creation::MergePDBatOverlapMover | private |
| attachment_chain_ | protocols::pose_creation::MergePDBatOverlapMover | private |
| attachment_termini_ | protocols::pose_creation::MergePDBatOverlapMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::pose_creation::MergePDBatOverlapMover | virtual |
| closest_non_overlap_residue(core::pose::Pose const &pose, core::Size resid, core::Size start_overlap_resid, core::Size end_overlap_resid) | protocols::pose_creation::MergePDBatOverlapMover | |
| create() | protocols::moves::Mover | virtual |
| fresh_instance() const override | protocols::pose_creation::MergePDBatOverlapMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::pose_creation::MergePDBatOverlapMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| increase_range_to_ignore_ss_element(core::pose::Pose const &pose, core::Size init_start, core::Size init_end, core::Size &ss_start, core::Size &ss_end) | protocols::pose_creation::MergePDBatOverlapMover | |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| makeJunctions_apply(core::pose::Pose &pose, core::pose::Pose const &attach_pose, core::Size overlap_length, core::Real max_overlap_rmsd, std::string attachment_termini, char chain) | protocols::pose_creation::MergePDBatOverlapMover | |
| max_overlap_rmsd_ | protocols::pose_creation::MergePDBatOverlapMover | private |
| merge_junction_sequence(Pose &pose, std::string pose_junction_seq, std::string attach_pose_junction_seq, core::Size first_overlap_position) | protocols::pose_creation::MergePDBatOverlapMover | |
| merge_poses(Pose &pose, Pose &attach_pose) | protocols::pose_creation::MergePDBatOverlapMover | |
| MergePDBatOverlapMover() | protocols::pose_creation::MergePDBatOverlapMover | |
| MergePDBatOverlapMover(core::scoring::ScoreFunctionOP sfxn) | protocols::pose_creation::MergePDBatOverlapMover | |
| minimize_after_overlap_ | protocols::pose_creation::MergePDBatOverlapMover | private |
| minimize_overlap(Pose &pose, core::Size overlap_start, core::Size overlap_end) | protocols::pose_creation::MergePDBatOverlapMover | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::pose_creation::MergePDBatOverlapMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| overlap_length_ | protocols::pose_creation::MergePDBatOverlapMover | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override | protocols::pose_creation::MergePDBatOverlapMover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::pose_creation::MergePDBatOverlapMover | static |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| sfxn_ | protocols::pose_creation::MergePDBatOverlapMover | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
1.8.7