protocols::sewing::scoring Namespace Reference

Classes
class	AssemblyScorer
	an interface for making Requirements that deal with Assemblies More...
class	AssemblyScorerCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...
class	AssemblyScorerFactory
	Create AssemblyScorers. More...
class	AssemblyScorerRegistrator
	This templated class will register an instance of an RequirementCreator (class T) with the RequirementFactory. It will ensure that no RequirementCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
class	InterModelMotifScorer
class	InterModelMotifScorerCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...
class	IntraDesignTerminusMotifScorer
class	IntraDesignTerminusMotifScorerCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...
class	LigandAssemblyScorer
	an interface for making Requirements that deal with Assemblies More...
class	LigandScorer
class	LigandScorerCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...
class	MotifScorer
class	MotifScorerCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...
class	PartnerMotifScorer
class	PartnerMotifScorerCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...
class	SegmentContactOrderScorer
class	SegmentContactOrderScorerCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...
class	StartingNodeMotifScorer
class	StartingNodeMotifScorerCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...
class	SubsetPartnerMotifScorer
class	SubsetPartnerMotifScorerCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...
class	TerminusMotifScorer
class	TerminusMotifScorerCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...
class	TopNMotifScorer
class	TopNMotifScorerCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...

Typedefs
typedef utility::pointer::shared_ptr < AssemblyScorer >	AssemblyScorerOP
typedef utility::pointer::shared_ptr < AssemblyScorer const >	AssemblyScorerCOP
typedef utility::pointer::shared_ptr < AssemblyScorerCreator >	AssemblyScorerCreatorOP
typedef utility::pointer::shared_ptr < AssemblyScorerCreator const >	AssemblyScorerCreatorCOP
typedef utility::pointer::shared_ptr < InterModelMotifScorer >	InterModelMotifScorerOP
typedef utility::pointer::shared_ptr < InterModelMotifScorer const >	InterModelMotifScorerCOP
typedef utility::pointer::shared_ptr < InterModelMotifScorerCreator >	InterModelMotifScorerCreatorOP
typedef utility::pointer::shared_ptr < InterModelMotifScorerCreator const >	InterModelMotifScorerCreatorCOP
typedef utility::pointer::shared_ptr < IntraDesignTerminusMotifScorer >	IntraDesignTerminusMotifScorerOP
typedef utility::pointer::shared_ptr < IntraDesignTerminusMotifScorer const >	IntraDesignTerminusMotifScorerCOP
typedef utility::pointer::shared_ptr < IntraDesignTerminusMotifScorerCreator >	IntraDesignTerminusMotifScorerCreatorOP
typedef utility::pointer::shared_ptr < IntraDesignTerminusMotifScorerCreator const >	IntraDesignTerminusMotifScorerCreatorCOP
typedef utility::pointer::shared_ptr < LigandAssemblyScorer >	LigandAssemblyScorerOP
typedef utility::pointer::shared_ptr < LigandAssemblyScorer const >	LigandAssemblyScorerCOP
typedef utility::pointer::shared_ptr < LigandScorer >	LigandScorerOP
typedef utility::pointer::shared_ptr < LigandScorer const >	LigandScorerCOP
typedef utility::pointer::shared_ptr < LigandScorerCreator >	LigandScorerCreatorOP
typedef utility::pointer::shared_ptr < LigandScorerCreator const >	LigandScorerCreatorCOP
typedef utility::pointer::shared_ptr < MotifScorer >	MotifScorerOP
typedef utility::pointer::shared_ptr < MotifScorer const >	MotifScorerCOP
typedef utility::pointer::shared_ptr < MotifScorerCreator >	MotifScorerCreatorOP
typedef utility::pointer::shared_ptr < MotifScorerCreator const >	MotifScorerCreatorCOP
typedef utility::pointer::shared_ptr < PartnerMotifScorer >	PartnerMotifScorerOP
typedef utility::pointer::shared_ptr < PartnerMotifScorer const >	PartnerMotifScorerCOP
typedef utility::pointer::shared_ptr < PartnerMotifScorerCreator >	PartnerMotifScorerCreatorOP
typedef utility::pointer::shared_ptr < PartnerMotifScorerCreator const >	PartnerMotifScorerCreatorCOP
typedef utility::pointer::shared_ptr < SegmentContactOrderScorer >	SegmentContactOrderScorerOP
typedef utility::pointer::shared_ptr < SegmentContactOrderScorer const >	SegmentContactOrderScorerCOP
typedef utility::pointer::shared_ptr < SegmentContactOrderScorerCreator >	SegmentContactOrderScorerCreatorOP
typedef utility::pointer::shared_ptr < SegmentContactOrderScorerCreator const >	SegmentContactOrderScorerCreatorCOP
typedef utility::pointer::shared_ptr < StartingNodeMotifScorer >	StartingNodeMotifScorerOP
typedef utility::pointer::shared_ptr < StartingNodeMotifScorer const >	StartingNodeMotifScorerCOP
typedef utility::pointer::shared_ptr < StartingNodeMotifScorerCreator >	StartingNodeMotifScorerCreatorOP
typedef utility::pointer::shared_ptr < StartingNodeMotifScorerCreator const >	StartingNodeMotifScorerCreatorCOP
typedef utility::pointer::shared_ptr < SubsetPartnerMotifScorer >	SubsetPartnerMotifScorerOP
typedef utility::pointer::shared_ptr < SubsetPartnerMotifScorer const >	SubsetPartnerMotifScorerCOP
typedef utility::pointer::shared_ptr < SubsetPartnerMotifScorerCreator >	SubsetPartnerMotifScorerCreatorOP
typedef utility::pointer::shared_ptr < SubsetPartnerMotifScorerCreator const >	SubsetPartnerMotifScorerCreatorCOP
typedef utility::pointer::shared_ptr < TerminusMotifScorer >	TerminusMotifScorerOP
typedef utility::pointer::shared_ptr < TerminusMotifScorer const >	TerminusMotifScorerCOP
typedef utility::pointer::shared_ptr < TerminusMotifScorerCreator >	TerminusMotifScorerCreatorOP
typedef utility::pointer::shared_ptr < TerminusMotifScorerCreator const >	TerminusMotifScorerCreatorCOP
typedef utility::pointer::shared_ptr < TopNMotifScorer >	TopNMotifScorerOP
typedef utility::pointer::shared_ptr < TopNMotifScorer const >	TopNMotifScorerCOP
typedef utility::pointer::shared_ptr < TopNMotifScorerCreator >	TopNMotifScorerCreatorOP
typedef utility::pointer::shared_ptr < TopNMotifScorerCreator const >	TopNMotifScorerCreatorCOP

Functions
static basic::Tracer	TR ("protocols.sewing.scoring.AssemblyScorerFactory")
static basic::Tracer	TR ("protocols.sewing.scoring.InterModelMotifScorer")
static basic::Tracer	TR ("protocols.sewing.scoring.IntraDesignTerminusMotifScorer")
static basic::Tracer	TR ("protocols.sewing.scoring.LigandScorer")
static basic::Tracer	TR ("protocols.sewing.scoring.MotifScorer")
static basic::Tracer	TR ("protocols.sewing.scoring.PartnerMotifScorer")
static basic::Tracer	TR ("protocols.sewing.scoring.SegmentContactOrderScorer")
static basic::Tracer	TR ("protocols.sewing.scoring.StartingNodeMotifScorer")
static basic::Tracer	TR ("protocols.sewing.scoring.SubsetPartnerMotifScorer")
static basic::Tracer	TR ("protocols.sewing.scoring.TerminusMotifScorer")
static basic::Tracer	TR ("protocols.sewing.scoring.TopNMotifScorer")

Typedef Documentation

typedef utility::pointer::shared_ptr< AssemblyScorer const > protocols::sewing::scoring::AssemblyScorerCOP

typedef utility::pointer::shared_ptr< AssemblyScorerCreator const > protocols::sewing::scoring::AssemblyScorerCreatorCOP

typedef utility::pointer::shared_ptr< AssemblyScorerCreator > protocols::sewing::scoring::AssemblyScorerCreatorOP

typedef utility::pointer::shared_ptr< AssemblyScorer > protocols::sewing::scoring::AssemblyScorerOP

typedef utility::pointer::shared_ptr< InterModelMotifScorer const > protocols::sewing::scoring::InterModelMotifScorerCOP

typedef utility::pointer::shared_ptr< InterModelMotifScorerCreator const > protocols::sewing::scoring::InterModelMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< InterModelMotifScorerCreator > protocols::sewing::scoring::InterModelMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< InterModelMotifScorer > protocols::sewing::scoring::InterModelMotifScorerOP

typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorer const > protocols::sewing::scoring::IntraDesignTerminusMotifScorerCOP

typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorerCreator const > protocols::sewing::scoring::IntraDesignTerminusMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorerCreator > protocols::sewing::scoring::IntraDesignTerminusMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorer > protocols::sewing::scoring::IntraDesignTerminusMotifScorerOP

typedef utility::pointer::shared_ptr< LigandAssemblyScorer const > protocols::sewing::scoring::LigandAssemblyScorerCOP

typedef utility::pointer::shared_ptr< LigandAssemblyScorer > protocols::sewing::scoring::LigandAssemblyScorerOP

typedef utility::pointer::shared_ptr< LigandScorer const > protocols::sewing::scoring::LigandScorerCOP

typedef utility::pointer::shared_ptr< LigandScorerCreator const > protocols::sewing::scoring::LigandScorerCreatorCOP

typedef utility::pointer::shared_ptr< LigandScorerCreator > protocols::sewing::scoring::LigandScorerCreatorOP

typedef utility::pointer::shared_ptr< LigandScorer > protocols::sewing::scoring::LigandScorerOP

typedef utility::pointer::shared_ptr< MotifScorer const > protocols::sewing::scoring::MotifScorerCOP

typedef utility::pointer::shared_ptr< MotifScorerCreator const > protocols::sewing::scoring::MotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< MotifScorerCreator > protocols::sewing::scoring::MotifScorerCreatorOP

typedef utility::pointer::shared_ptr< MotifScorer > protocols::sewing::scoring::MotifScorerOP

typedef utility::pointer::shared_ptr< PartnerMotifScorer const > protocols::sewing::scoring::PartnerMotifScorerCOP

typedef utility::pointer::shared_ptr< PartnerMotifScorerCreator const > protocols::sewing::scoring::PartnerMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< PartnerMotifScorerCreator > protocols::sewing::scoring::PartnerMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< PartnerMotifScorer > protocols::sewing::scoring::PartnerMotifScorerOP

typedef utility::pointer::shared_ptr< SegmentContactOrderScorer const > protocols::sewing::scoring::SegmentContactOrderScorerCOP

typedef utility::pointer::shared_ptr< SegmentContactOrderScorerCreator const > protocols::sewing::scoring::SegmentContactOrderScorerCreatorCOP

typedef utility::pointer::shared_ptr< SegmentContactOrderScorerCreator > protocols::sewing::scoring::SegmentContactOrderScorerCreatorOP

typedef utility::pointer::shared_ptr< SegmentContactOrderScorer > protocols::sewing::scoring::SegmentContactOrderScorerOP

typedef utility::pointer::shared_ptr< StartingNodeMotifScorer const > protocols::sewing::scoring::StartingNodeMotifScorerCOP

typedef utility::pointer::shared_ptr< StartingNodeMotifScorerCreator const > protocols::sewing::scoring::StartingNodeMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< StartingNodeMotifScorerCreator > protocols::sewing::scoring::StartingNodeMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< StartingNodeMotifScorer > protocols::sewing::scoring::StartingNodeMotifScorerOP

typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorer const > protocols::sewing::scoring::SubsetPartnerMotifScorerCOP

typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorerCreator const > protocols::sewing::scoring::SubsetPartnerMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorerCreator > protocols::sewing::scoring::SubsetPartnerMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorer > protocols::sewing::scoring::SubsetPartnerMotifScorerOP

typedef utility::pointer::shared_ptr< TerminusMotifScorer const > protocols::sewing::scoring::TerminusMotifScorerCOP

typedef utility::pointer::shared_ptr< TerminusMotifScorerCreator const > protocols::sewing::scoring::TerminusMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< TerminusMotifScorerCreator > protocols::sewing::scoring::TerminusMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< TerminusMotifScorer > protocols::sewing::scoring::TerminusMotifScorerOP

typedef utility::pointer::shared_ptr< TopNMotifScorer const > protocols::sewing::scoring::TopNMotifScorerCOP

typedef utility::pointer::shared_ptr< TopNMotifScorerCreator const > protocols::sewing::scoring::TopNMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< TopNMotifScorerCreator > protocols::sewing::scoring::TopNMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< TopNMotifScorer > protocols::sewing::scoring::TopNMotifScorerOP

Function Documentation

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.PartnerMotifScorer"  )

static

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.SubsetPartnerMotifScorer"  )

static

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.AssemblyScorerFactory"  )

static

Referenced by protocols::sewing::scoring::InterModelMotifScorer::full_motif_score(), protocols::sewing::scoring::TopNMotifScorer::full_motif_score(), protocols::sewing::scoring::StartingNodeMotifScorer::full_motif_score(), protocols::sewing::scoring::AssemblyScorerFactory::get_assembly_scorer(), protocols::sewing::scoring::TopNMotifScorer::score(), protocols::sewing::scoring::InterModelMotifScorer::score(), protocols::sewing::scoring::LigandScorer::score(), protocols::sewing::scoring::MotifScorer::score(), protocols::sewing::scoring::SegmentContactOrderScorer::set_options_from_tag(), protocols::sewing::scoring::StartingNodeMotifScorer::set_options_from_tag(), protocols::sewing::scoring::InterModelMotifScorer::set_options_from_tag(), protocols::sewing::scoring::PartnerMotifScorer::set_options_from_tag(), protocols::sewing::scoring::TopNMotifScorer::set_options_from_tag(), protocols::sewing::scoring::IntraDesignTerminusMotifScorer::set_options_from_tag(), protocols::sewing::scoring::MotifScorer::set_options_from_tag(), protocols::sewing::scoring::SubsetPartnerMotifScorer::set_options_from_tag(), protocols::sewing::scoring::TerminusMotifScorer::set_options_from_tag(), protocols::sewing::scoring::LigandScorer::set_options_from_tag(), protocols::sewing::scoring::SubsetPartnerMotifScorer::set_starts_and_ends(), protocols::sewing::scoring::IntraDesignTerminusMotifScorer::terminus_motif_score(), and protocols::sewing::scoring::TerminusMotifScorer::terminus_motif_score().

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.MotifScorer"  )

static

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.SegmentContactOrderScorer"  )

static

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.StartingNodeMotifScorer"  )

static

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.InterModelMotifScorer"  )

static

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.TopNMotifScorer"  )

static

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.TerminusMotifScorer"  )

static

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.IntraDesignTerminusMotifScorer"  )

static

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.LigandScorer"  )

static