| _static_type_name() | protocols::topology_broker::DisulfJumpClaimer | inlinestatic |
| accept_declined_claim(claims::DofClaim const &was_declined) override | protocols::topology_broker::FragmentClaimer | virtual |
| add_constraints(core::pose::Pose &) const | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| add_mover(moves::RandomMover &, core::pose::Pose const &, abinitio::StageID, core::scoring::ScoreFunction const &, core::Real) | protocols::topology_broker::TopologyClaimer | virtual |
| adjust_relax_movemap(core::kinematics::MoveMap &) const | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| all_frames_ | protocols::topology_broker::DisulfJumpClaimer | private |
| all_jump_pairings_ | protocols::topology_broker::DisulfJumpClaimer | private |
| allow_claim(claims::DofClaim const &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| bKeepJumpsFromInputPose_ | protocols::topology_broker::DisulfJumpClaimer | private |
| broker() const | protocols::topology_broker::TopologyClaimer | inline |
| build_fold_tree(core::pose::Pose &, core::kinematics::FoldTree &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| claim_accepted(claims::DofClaimOP my_claim) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| claimer_builds_own_fold_tree() | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| clone() const override | protocols::topology_broker::DisulfJumpClaimer | virtual |
| DisulfJumpClaimer() | protocols::topology_broker::DisulfJumpClaimer | |
| finalize_claims(claims::DofClaims &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| FragmentClaimer() | protocols::topology_broker::FragmentClaimer | |
| FragmentClaimer(simple_moves::FragmentMoverOP, std::string const &mover_tag, weights::AbinitioMoverWeightOP weight) | protocols::topology_broker::FragmentClaimer | |
| FragmentClaimer(simple_moves::FragmentMoverOP, std::string const &mover_tag, weights::AbinitioMoverWeightOP weight, std::string label, core::fragment::FragSetOP fags) | protocols::topology_broker::FragmentClaimer | |
| FragmentClaimer(simple_moves::FragmentMoverOP) | protocols::topology_broker::FragmentClaimer | |
| FragmentClaimer(FragmentClaimer const &src) | protocols::topology_broker::FragmentClaimer | |
| fragments() | protocols::topology_broker::FragmentClaimer | protected |
| generate_claims(claims::DofClaims &) override | protocols::topology_broker::DisulfJumpClaimer | virtual |
| generate_jump_frags(protocols::jumping::DisulfPairingLibrary const &lib, core::fragment::FrameList &all_frames) const | protocols::topology_broker::DisulfJumpClaimer | |
| generate_sequence_claims(claims::DofClaims &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| generate_symmetry_claims(claims::SymmetryClaims &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| get_fold_tree(core::pose::Pose &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| get_frag_mover_ptr() | protocols::topology_broker::FragmentClaimer | protected |
| get_mover(core::pose::Pose const &) const override | protocols::topology_broker::FragmentClaimer | virtual |
| get_pose_from_claimer() | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| get_self_ptr() const | protocols::topology_broker::TopologyClaimer | inline |
| get_self_ptr() | protocols::topology_broker::TopologyClaimer | inline |
| get_self_weak_ptr() const | protocols::topology_broker::TopologyClaimer | inline |
| get_self_weak_ptr() | protocols::topology_broker::TopologyClaimer | inline |
| get_sequence_region(std::set< core::Size > &start_region) const | protocols::topology_broker::FragmentClaimer | |
| init_after_reading() override | protocols::topology_broker::FragmentClaimer | protectedvirtual |
| initialize_dofs(core::pose::Pose &, claims::DofClaims const &init_claims, claims::DofClaims &failed_to_init) override | protocols::topology_broker::DisulfJumpClaimer | virtual |
| label() const | protocols::topology_broker::TopologyClaimer | inline |
| local_disulf_data_ | protocols::topology_broker::DisulfJumpClaimer | private |
| loop_frags(core::kinematics::MoveMap &) const | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| manipulate_cut_bias(utility::vector1< core::Real > &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| movemap_ | protocols::topology_broker::FragmentClaimer | protected |
| mover() const | protocols::topology_broker::FragmentClaimer | inlineprotected |
| mover_tag() const | protocols::topology_broker::FragmentClaimer | inline |
| mover_weight() | protocols::topology_broker::TopologyClaimer | inline |
| new_decoy(core::pose::Pose const &) override | protocols::topology_broker::DisulfJumpClaimer | virtual |
| new_decoy() override | protocols::topology_broker::DisulfJumpClaimer | virtual |
| Parent typedef | protocols::topology_broker::DisulfJumpClaimer | private |
| passes_filter(core::pose::Pose const &, abinitio::StageID, core::Real, std::ostringstream &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| pre_process(core::pose::Pose &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| read(std::istream &) | protocols::topology_broker::TopologyClaimer | virtual |
| read_mover_weight(std::istream &is) | protocols::topology_broker::TopologyClaimer | |
| read_tag(std::string tag, std::istream &is) override | protocols::topology_broker::DisulfJumpClaimer | virtual |
| receive_message(ClaimerMessage &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| set_bInitDofs(bool set) | protocols::topology_broker::FragmentClaimer | inline |
| set_broker(TopologyBrokerCAP ptr) | protocols::topology_broker::TopologyClaimer | inline |
| set_claim_right(claims::DofClaim::ClaimRight setting) | protocols::topology_broker::FragmentClaimer | inlineprotected |
| set_defaults() | protocols::topology_broker::TopologyClaimer | protectedvirtual |
| set_fragments(core::fragment::FragSetOP) | protocols::topology_broker::FragmentClaimer | protected |
| set_label(std::string const &str) | protocols::topology_broker::TopologyClaimer | inline |
| set_mover(simple_moves::FragmentMoverOP mover) | protocols::topology_broker::FragmentClaimer | |
| set_mover_tag(std::string const &str) | protocols::topology_broker::FragmentClaimer | |
| set_mover_weight(weights::AbinitioMoverWeightOP wset) | protocols::topology_broker::TopologyClaimer | inline |
| set_pose_from_broker(core::pose::Pose &) | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| shared_from_this() | protocols::topology_broker::FragmentClaimer | inline |
| switch_to_fullatom(core::pose::Pose &, utility::vector1< bool >) const | protocols::topology_broker::TopologyClaimer | inlinevirtual |
| TopologyClaimer() | protocols::topology_broker::TopologyClaimer | inline |
| TopologyClaimer(weights::AbinitioMoverWeightOP weight) | protocols::topology_broker::TopologyClaimer | inline |
| type() const override | protocols::topology_broker::DisulfJumpClaimer | inlinevirtual |
| ~DisulfJumpClaimer() override | protocols::topology_broker::DisulfJumpClaimer | |
| ~FragmentClaimer() override | protocols::topology_broker::FragmentClaimer | |
| ~TopologyClaimer() override=default | protocols::topology_broker::TopologyClaimer | |
1.8.7