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protocols::antibody::AntibodyEnumManager Class Reference

Interface to this class is in AntibodyInfo. More...

#include <AntibodyEnumManager.hh>

Inheritance diagram for protocols::antibody::AntibodyEnumManager:
Inheritance graph
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Public Member Functions

 AntibodyEnumManager ()
 
 ~AntibodyEnumManager () override
 
CDRNameEnum cdr_name_string_to_enum (std::string const &cdr_name) const
 
std::string cdr_name_enum_to_string (CDRNameEnum const cdr_name) const
 
bool cdr_name_is_present (std::string const &cdr_name) const
 
AntibodyNumberingSchemeEnum numbering_scheme_string_to_enum (std::string const &numbering_scheme) const
 
std::string numbering_scheme_enum_to_string (AntibodyNumberingSchemeEnum const numbering_scheme) const
 
bool numbering_scheme_is_present (std::string const &numbering_scheme) const
 
utility::vector1< std::string > get_recognized_numbering_schemes () const
 
CDRDefinitionEnum cdr_definition_string_to_enum (std::string const &cdr_definition) const
 
std::string cdr_definition_enum_to_string (CDRDefinitionEnum const cdr_definition) const
 
bool cdr_definition_is_present (std::string const &cdr_definition) const
 
utility::vector1< std::string > get_recognized_cdr_definitions () const
 
LightChainTypeEnum light_chain_type_string_to_enum (std::string const &light_chain) const
 
std::string light_chain_type_enum_to_string (LightChainTypeEnum const light_chain) const
 
bool light_chain_type_is_present (std::string const &light_chain) const
 
H3BaseTypeEnum h3_base_type_string_to_enum (std::string const &base_type) const
 
std::string h3_base_type_enum_to_string (H3BaseTypeEnum const base_type) const
 
CDRLandmarkEnum cdr_landmark_string_to_enum (std::string const &landmark) const
 
std::string cdr_landmark_enum_to_string (CDRLandmarkEnum const landmark) const
 
bool cdr_landmark_is_present (std::string const &landmark) const
 
PackingAngleEnum packing_angle_string_to_enum (std::string const &angle_type) const
 
std::string packing_angle_enum_to_string (PackingAngleEnum const angle_type) const
 
AntibodyRegionEnum antibody_region_string_to_enum (std::string const &antibody_region) const
 
std::string antibody_region_enum_to_string (AntibodyRegionEnum const antibody_region) const
 
utility::vector1< CDRNameEnum >
const & 		all_cdrs (bool include_proto_cdr4=false)
 

Private Member Functions

void setup ()
 

Private Attributes

utility::vector1< std::string > cdr_name_to_string_
 
std::map< std::string,
CDRNameEnum > 		cdr_name_to_enum_
 
utility::vector1< std::string > numbering_scheme_to_string_
 
std::map< std::string,
AntibodyNumberingSchemeEnum > 		numbering_scheme_to_enum_
 
utility::vector1< std::string > cdr_definition_to_string_
 
std::map< std::string,
CDRDefinitionEnum > 		cdr_definition_to_enum_
 
utility::vector1< std::string > light_chain_type_to_string_
 
std::map< std::string,
LightChainTypeEnum > 		light_chain_type_to_enum_
 
utility::vector1< std::string > h3_base_type_to_string_
 
std::map< std::string,
H3BaseTypeEnum > 		h3_base_type_to_enum_
 
utility::vector1< std::string > packing_angle_to_string_
 
std::map< std::string,
PackingAngleEnum > 		packing_angle_to_enum_
 
utility::vector1< std::string > cdr_landmark_to_string_
 
std::map< std::string,
CDRLandmarkEnum > 		cdr_landmark_to_enum_
 
utility::vector1< std::string > antibody_region_to_string_
 
std::map< std::string,
AntibodyRegionEnum > 		antibody_region_to_enum_
 
utility::vector1< CDRNameEnum > all_cdrs_
 
utility::vector1< CDRNameEnum > all_cdrs_and_proto_
 

Detailed Description

Interface to this class is in AntibodyInfo.

Constructor & Destructor Documentation

protocols::antibody::AntibodyEnumManager::AntibodyEnumManager ( )

References setup().

protocols::antibody::AntibodyEnumManager::~AntibodyEnumManager ( )
overridedefault

Member Function Documentation

utility::vector1< CDRNameEnum > const & protocols::antibody::AntibodyEnumManager::all_cdrs ( bool  include_proto_cdr4 = false)

References all_cdrs_, and all_cdrs_and_proto_.

std::string protocols::antibody::AntibodyEnumManager::antibody_region_enum_to_string ( AntibodyRegionEnum const  antibody_region) const

References antibody_region_to_string_.

AntibodyRegionEnum protocols::antibody::AntibodyEnumManager::antibody_region_string_to_enum ( std::string const &  antibody_region) const

References antibody_region_to_enum_.

Referenced by protocols::antibody::residue_selector::AntibodyRegionSelector::parse_my_tag(), and protocols::antibody::task_operations::DisableAntibodyRegionOperation::parse_tag().

std::string protocols::antibody::AntibodyEnumManager::cdr_definition_enum_to_string ( CDRDefinitionEnum const  cdr_definition) const

References cdr_definition_to_string_.

bool protocols::antibody::AntibodyEnumManager::cdr_definition_is_present ( std::string const &  cdr_definition) const

References cdr_definition_to_enum_.

CDRDefinitionEnum protocols::antibody::AntibodyEnumManager::cdr_definition_string_to_enum ( std::string const &  cdr_definition) const

References cdr_definition_to_enum_.

Referenced by protocols::antibody::AntibodyFeatures::parse_my_tag(), protocols::antibody::residue_selector::AntibodyRegionSelector::parse_my_tag(), protocols::antibody::residue_selector::CDRResidueSelector::parse_my_tag(), protocols::antibody::AntibodyCDRGrafter::parse_my_tag(), protocols::antibody::task_operations::DisableAntibodyRegionOperation::parse_tag(), protocols::antibody::task_operations::DisableCDRsOperation::parse_tag(), protocols::antibody::task_operations::RestrictToCDRsAndNeighbors::parse_tag(), protocols::antibody::task_operations::DisableAntibodyRegionOperation::set_defaults(), protocols::antibody::task_operations::DisableCDRsOperation::set_defaults(), protocols::antibody::residue_selector::AntibodyRegionSelector::set_defaults(), protocols::antibody::residue_selector::CDRResidueSelector::set_defaults(), protocols::antibody::task_operations::RestrictToCDRsAndNeighbors::set_defaults(), and protocols::antibody::AntibodyCDRGrafter::set_defaults().

std::string protocols::antibody::AntibodyEnumManager::cdr_landmark_enum_to_string ( CDRLandmarkEnum const  landmark) const

References cdr_landmark_to_string_.

bool protocols::antibody::AntibodyEnumManager::cdr_landmark_is_present ( std::string const &  landmark) const

References cdr_landmark_to_enum_.

CDRLandmarkEnum protocols::antibody::AntibodyEnumManager::cdr_landmark_string_to_enum ( std::string const &  landmark) const

References cdr_landmark_to_enum_.

std::string protocols::antibody::AntibodyEnumManager::cdr_name_enum_to_string ( CDRNameEnum const  cdr_name) const

References cdr_name_to_string_.

bool protocols::antibody::AntibodyEnumManager::cdr_name_is_present ( std::string const &  cdr_name) const

References cdr_name_to_enum_.

CDRNameEnum protocols::antibody::AntibodyEnumManager::cdr_name_string_to_enum ( std::string const &  cdr_name) const

References cdr_name_to_enum_.

Referenced by protocols::antibody::get_cdr_bool_from_tag(), and protocols::antibody::constraints::CDRDihedralConstraintMover::parse_my_tag().

utility::vector1< std::string > protocols::antibody::AntibodyEnumManager::get_recognized_cdr_definitions ( ) const

References cdr_definition_to_enum_.

utility::vector1< std::string > protocols::antibody::AntibodyEnumManager::get_recognized_numbering_schemes ( ) const

References numbering_scheme_to_enum_.

std::string protocols::antibody::AntibodyEnumManager::h3_base_type_enum_to_string ( H3BaseTypeEnum const  base_type) const

References h3_base_type_to_string_.

H3BaseTypeEnum protocols::antibody::AntibodyEnumManager::h3_base_type_string_to_enum ( std::string const &  base_type) const

References h3_base_type_to_enum_.

std::string protocols::antibody::AntibodyEnumManager::light_chain_type_enum_to_string ( LightChainTypeEnum const  light_chain) const

References light_chain_type_to_string_.

bool protocols::antibody::AntibodyEnumManager::light_chain_type_is_present ( std::string const &  light_chain) const

References light_chain_type_to_enum_.

LightChainTypeEnum protocols::antibody::AntibodyEnumManager::light_chain_type_string_to_enum ( std::string const &  light_chain) const

References light_chain_type_to_enum_.

std::string protocols::antibody::AntibodyEnumManager::numbering_scheme_enum_to_string ( AntibodyNumberingSchemeEnum const  numbering_scheme) const

References numbering_scheme_to_string_.

bool protocols::antibody::AntibodyEnumManager::numbering_scheme_is_present ( std::string const &  numbering_scheme) const

References numbering_scheme_to_enum_.

Referenced by protocols::antibody::AntibodyNumberingConverterMover::parse_my_tag().

AntibodyNumberingSchemeEnum protocols::antibody::AntibodyEnumManager::numbering_scheme_string_to_enum ( std::string const &  numbering_scheme) const

References numbering_scheme_to_enum_.

Referenced by protocols::antibody::design::MutateFrameworkForCluster::load_data(), protocols::antibody::AntibodyFeatures::parse_my_tag(), protocols::antibody::residue_selector::AntibodyRegionSelector::parse_my_tag(), protocols::antibody::AntibodyNumberingConverterMover::parse_my_tag(), protocols::antibody::residue_selector::CDRResidueSelector::parse_my_tag(), protocols::antibody::AntibodyCDRGrafter::parse_my_tag(), protocols::antibody::task_operations::DisableAntibodyRegionOperation::parse_tag(), protocols::antibody::task_operations::DisableCDRsOperation::parse_tag(), protocols::antibody::task_operations::AddCDRProfileSetsOperation::parse_tag(), protocols::antibody::task_operations::RestrictToCDRsAndNeighbors::parse_tag(), protocols::antibody::task_operations::AddCDRProfilesOperation::parse_tag(), protocols::antibody::task_operations::DisableAntibodyRegionOperation::set_defaults(), protocols::antibody::task_operations::DisableCDRsOperation::set_defaults(), protocols::antibody::residue_selector::AntibodyRegionSelector::set_defaults(), protocols::antibody::task_operations::AddCDRProfileSetsOperation::set_defaults(), protocols::antibody::residue_selector::CDRResidueSelector::set_defaults(), protocols::antibody::task_operations::RestrictToCDRsAndNeighbors::set_defaults(), protocols::antibody::task_operations::AddCDRProfilesOperation::set_defaults(), and protocols::antibody::AntibodyCDRGrafter::set_defaults().

std::string protocols::antibody::AntibodyEnumManager::packing_angle_enum_to_string ( PackingAngleEnum const  angle_type) const

References packing_angle_to_string_.

PackingAngleEnum protocols::antibody::AntibodyEnumManager::packing_angle_string_to_enum ( std::string const &  angle_type) const

References packing_angle_to_enum_.

void protocols::antibody::AntibodyEnumManager::setup ( )
private

References protocols::antibody::AHO_Scheme, all_cdrs_, all_cdrs_and_proto_, antibody_region_to_enum_, antibody_region_to_string_, protocols::antibody::AntibodyNumberingSchemeEnum_total, protocols::antibody::AntibodyRegionEnum_total, protocols::antibody::antigen_region, protocols::antibody::Aroop, cdr_definition_to_enum_, cdr_definition_to_string_, protocols::antibody::cdr_end, cdr_landmark_to_enum_, cdr_landmark_to_string_, cdr_name_to_enum_, cdr_name_to_string_, protocols::antibody::cdr_region, protocols::antibody::cdr_start, protocols::antibody::CDRDefinitionEnum_total, protocols::antibody::CDRLandmarkEnum_total, protocols::antibody::CDRNameEnum_proto_total, protocols::antibody::Chothia, protocols::antibody::Chothia_Scheme, protocols::antibody::Enhanced_Chothia_Scheme, protocols::antibody::Extended, protocols::antibody::framework_region, protocols::antibody::h1, protocols::antibody::h2, protocols::antibody::h3, h3_base_type_to_enum_, h3_base_type_to_string_, protocols::antibody::H3BaseTypeEnum_total, protocols::antibody::h4, protocols::antibody::IMGT_Scheme, protocols::antibody::Kabat, protocols::antibody::Kabat_Scheme, protocols::antibody::kappa, protocols::antibody::Kinked, protocols::antibody::l1, protocols::antibody::l2, protocols::antibody::l3, protocols::antibody::l4, protocols::antibody::lambda, protocols::antibody::lambda6, light_chain_type_to_enum_, light_chain_type_to_string_, protocols::antibody::LightChainTypeEnum_total, protocols::antibody::Martin, protocols::antibody::Neutral, protocols::antibody::North, numbering_scheme_to_enum_, numbering_scheme_to_string_, packing_angle_to_enum_, packing_angle_to_string_, protocols::antibody::PackingAngleEnum_total, protocols::antibody::proto_h4, protocols::antibody::proto_l4, protocols::antibody::unknown, protocols::antibody::Unknown, protocols::antibody::VH_sheet_1, protocols::antibody::VH_sheet_2, protocols::antibody::VL_sheet_1, and protocols::antibody::VL_sheet_2.

Referenced by AntibodyEnumManager().

Member Data Documentation

utility::vector1< CDRNameEnum > protocols::antibody::AntibodyEnumManager::all_cdrs_
private

Referenced by all_cdrs(), and setup().

utility::vector1< CDRNameEnum > protocols::antibody::AntibodyEnumManager::all_cdrs_and_proto_
private

Referenced by all_cdrs(), and setup().

std::map< std::string, AntibodyRegionEnum > protocols::antibody::AntibodyEnumManager::antibody_region_to_enum_
private

Referenced by antibody_region_string_to_enum(), and setup().

utility::vector1< std::string > protocols::antibody::AntibodyEnumManager::antibody_region_to_string_
private

Referenced by antibody_region_enum_to_string(), and setup().

std::map< std::string, CDRDefinitionEnum > protocols::antibody::AntibodyEnumManager::cdr_definition_to_enum_
private

Referenced by cdr_definition_is_present(), cdr_definition_string_to_enum(), get_recognized_cdr_definitions(), and setup().

utility::vector1< std::string > protocols::antibody::AntibodyEnumManager::cdr_definition_to_string_
private

Referenced by cdr_definition_enum_to_string(), and setup().

std::map< std::string, CDRLandmarkEnum > protocols::antibody::AntibodyEnumManager::cdr_landmark_to_enum_
private

Referenced by cdr_landmark_is_present(), cdr_landmark_string_to_enum(), and setup().

utility::vector1< std::string > protocols::antibody::AntibodyEnumManager::cdr_landmark_to_string_
private

Referenced by cdr_landmark_enum_to_string(), and setup().

std::map< std::string, CDRNameEnum > protocols::antibody::AntibodyEnumManager::cdr_name_to_enum_
private

Referenced by cdr_name_is_present(), cdr_name_string_to_enum(), and setup().

utility::vector1< std::string > protocols::antibody::AntibodyEnumManager::cdr_name_to_string_
private

Referenced by cdr_name_enum_to_string(), and setup().

std::map< std::string, H3BaseTypeEnum > protocols::antibody::AntibodyEnumManager::h3_base_type_to_enum_
private

Referenced by h3_base_type_string_to_enum(), and setup().

utility::vector1< std::string > protocols::antibody::AntibodyEnumManager::h3_base_type_to_string_
private

Referenced by h3_base_type_enum_to_string(), and setup().

std::map< std::string, LightChainTypeEnum > protocols::antibody::AntibodyEnumManager::light_chain_type_to_enum_
private

Referenced by light_chain_type_is_present(), light_chain_type_string_to_enum(), and setup().

utility::vector1< std::string > protocols::antibody::AntibodyEnumManager::light_chain_type_to_string_
private

Referenced by light_chain_type_enum_to_string(), and setup().

std::map< std::string, AntibodyNumberingSchemeEnum > protocols::antibody::AntibodyEnumManager::numbering_scheme_to_enum_
private

Referenced by get_recognized_numbering_schemes(), numbering_scheme_is_present(), numbering_scheme_string_to_enum(), and setup().

utility::vector1< std::string > protocols::antibody::AntibodyEnumManager::numbering_scheme_to_string_
private

Referenced by numbering_scheme_enum_to_string(), and setup().

std::map< std::string, PackingAngleEnum > protocols::antibody::AntibodyEnumManager::packing_angle_to_enum_
private

Referenced by packing_angle_string_to_enum(), and setup().

utility::vector1< std::string > protocols::antibody::AntibodyEnumManager::packing_angle_to_string_
private

Referenced by packing_angle_enum_to_string(), and setup().

The documentation for this class was generated from the following files:
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