protocols::nmr::pcs::PCSLigandTransformMover Member List

This is the complete list of members for protocols::nmr::pcs::PCSLigandTransformMover, including all inherited members.

apply(Pose &pose) override	protocols::nmr::pcs::PCSLigandTransformMover	virtual
BoundingBox typedef	protocols::nmr::pcs::PCSLigandTransformMover
build_ligand_atom_xyz_table(Residue const &ligand)	protocols::nmr::pcs::PCSLigandTransformMover	private
chain_	protocols::nmr::pcs::PCSLigandTransformMover	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::nmr::pcs::PCSLigandTransformMover	virtual
create()	protocols::moves::Mover	virtual
damped_resolution(Real rmax, Real rmin)	protocols::nmr::pcs::PCSLigandTransformMover	private
define_ligand_frame_origin(Residue const &ligand)	protocols::nmr::pcs::PCSLigandTransformMover	private
do_optimized_transform()	protocols::nmr::pcs::PCSLigandTransformMover	inline
find_best_ligand_pose_with_grid_search(core::Size const &resid, Residue const &ligand, Vector &position, Vector &orientation)	protocols::nmr::pcs::PCSLigandTransformMover	private
fresh_instance() const override	protocols::nmr::pcs::PCSLigandTransformMover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_chain() const	protocols::nmr::pcs::PCSLigandTransformMover	inline
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_gridsearch_range() const	protocols::nmr::pcs::PCSLigandTransformMover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::nmr::pcs::PCSLigandTransformMover	virtual
get_native_pose() const	protocols::moves::Mover
get_pcs_data() const	protocols::nmr::pcs::PCSLigandTransformMover	inline
get_resolution_damping() const	protocols::nmr::pcs::PCSLigandTransformMover	inline
get_rot_step() const	protocols::nmr::pcs::PCSLigandTransformMover	inline
get_scorefunction()	protocols::nmr::pcs::PCSLigandTransformMover	inline
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_trans_step() const	protocols::nmr::pcs::PCSLigandTransformMover	inline
get_type() const	protocols::moves::Mover	inline
grid_	protocols::nmr::pcs::PCSLigandTransformMover	private
gs_box_	protocols::nmr::pcs::PCSLigandTransformMover	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
local_rotation(Matrix const &R, Vector const &ori, Vector const &v)	protocols::nmr::pcs::PCSLigandTransformMover	private
Matrix typedef	protocols::nmr::pcs::PCSLigandTransformMover
move_ligand_close_to_surface(Pose &pose, core::Size const &ligand_resid)	protocols::nmr::pcs::PCSLigandTransformMover	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::nmr::pcs::PCSLigandTransformMover	static
name()	protocols::moves::Mover	inlinestatic
next_ligand_orientation(Vector &abc)	protocols::nmr::pcs::PCSLigandTransformMover	private
next_ligand_position(Vector &xyz)	protocols::nmr::pcs::PCSLigandTransformMover	private
operator=(PCSLigandTransformMover const &rhs)	protocols::nmr::pcs::PCSLigandTransformMover
optimize_ligand_pose_with_nls(Residue const &ligand, Vector &position, Vector &orientation)	protocols::nmr::pcs::PCSLigandTransformMover	private
optimize_transform_	protocols::nmr::pcs::PCSLigandTransformMover	private
optimized_transform() const	protocols::nmr::pcs::PCSLigandTransformMover	inline
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override	protocols::nmr::pcs::PCSLigandTransformMover	virtual
pcs_data_	protocols::nmr::pcs::PCSLigandTransformMover	private
pcs_data_file_	protocols::nmr::pcs::PCSLigandTransformMover	private
pcs_lmmin(Real const *par, int, void const *data, Real *fvec, int *)	protocols::nmr::pcs::PCSLigandTransformMover	friend
PCSData typedef	protocols::nmr::pcs::PCSLigandTransformMover
PCSDataCOP typedef	protocols::nmr::pcs::PCSLigandTransformMover
PCSDataOP typedef	protocols::nmr::pcs::PCSLigandTransformMover
PCSLigandTransformMover()	protocols::nmr::pcs::PCSLigandTransformMover
PCSLigandTransformMover(PCSDataCOP data, ScoreFunctionCOP sfxn)	protocols::nmr::pcs::PCSLigandTransformMover
PCSLigandTransformMover(PCSLigandTransformMover const &other)	protocols::nmr::pcs::PCSLigandTransformMover
Pose typedef	protocols::nmr::pcs::PCSLigandTransformMover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::nmr::pcs::PCSLigandTransformMover	static
Real typedef	protocols::nmr::pcs::PCSLigandTransformMover
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_grid_and_bounding_box(Pose const &pose, core::Size const &ligand_resid)	protocols::nmr::pcs::PCSLigandTransformMover	private
reset_status()	protocols::moves::Mover
Residue typedef	protocols::nmr::pcs::PCSLigandTransformMover
rot_step_	protocols::nmr::pcs::PCSLigandTransformMover	private
rsol_damping_	protocols::nmr::pcs::PCSLigandTransformMover	private
ScoreFunctionCOP typedef	protocols::nmr::pcs::PCSLigandTransformMover
ScoreFunctionOP typedef	protocols::nmr::pcs::PCSLigandTransformMover
set_chain(char const c)	protocols::nmr::pcs::PCSLigandTransformMover	inline
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_gridsearch_range(BoundingBox const &box)	protocols::nmr::pcs::PCSLigandTransformMover	inline
set_gridsearch_range(Vector const &lower, Vector const &upper)	protocols::nmr::pcs::PCSLigandTransformMover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_resolution_damping(Real damping)	protocols::nmr::pcs::PCSLigandTransformMover	inline
set_rot_step(Real step)	protocols::nmr::pcs::PCSLigandTransformMover	inline
set_scorefunction(ScoreFunctionOP sfxn)	protocols::nmr::pcs::PCSLigandTransformMover	inline
set_trans_step(Real step)	protocols::nmr::pcs::PCSLigandTransformMover	inline
set_type(std::string const &setting)	protocols::moves::Mover	inline
sfxn_	protocols::nmr::pcs::PCSLigandTransformMover	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Size typedef	protocols::nmr::pcs::PCSLigandTransformMover
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
trans_step_	protocols::nmr::pcs::PCSLigandTransformMover	private
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
undo_optimized_transform()	protocols::nmr::pcs::PCSLigandTransformMover	inline
Vec5 typedef	protocols::nmr::pcs::PCSLigandTransformMover
Vector typedef	protocols::nmr::pcs::PCSLigandTransformMover
~PCSLigandTransformMover() override	protocols::nmr::pcs::PCSLigandTransformMover