core::scoring::rna::RNA_EnergyMethodOptions Class Reference

#include <RNA_EnergyMethodOptions.hh>

Inheritance diagram for core::scoring::rna::RNA_EnergyMethodOptions:

Public Member Functions
	RNA_EnergyMethodOptions ()
	~RNA_EnergyMethodOptions () override
void	initialize_from_options ()
core::Real	syn_G_potential_bonus () const
	Parameter for adjusting syn-G potential level in RNA_TorsionPotential. More...
void	syn_G_potential_bonus (core::Real setting)
std::string	torsion_potential () const
	Parameter for changing torsion_potential directory name. More...
void	torsion_potential (std::string const &setting)
std::string	suiteness_bonus () const
	Parameter for changing suiteness_bonus directory name. More...
void	suiteness_bonus (std::string const &setting)
std::string	rna_base_pair_xy_filename () const
	Parameter for changing rna_base_pair_xy file name. More...
void	rna_base_pair_xy_filename (std::string const &setting)
void	show (std::ostream &out) const

Private Attributes
core::Real	syn_G_potential_bonus_
std::string	torsion_potential_
std::string	suiteness_bonus_
std::string	rna_base_pair_xy_filename_

Friends
bool	operator== (RNA_EnergyMethodOptions const &a, RNA_EnergyMethodOptions const &b)
std::ostream &	operator<< (std::ostream &out, const RNA_EnergyMethodOptions &options)

Constructor & Destructor Documentation

core::scoring::rna::RNA_EnergyMethodOptions::RNA_EnergyMethodOptions

(

)

References initialize_from_options().

core::scoring::rna::RNA_EnergyMethodOptions::~RNA_EnergyMethodOptions ( )

overridedefault

Member Function Documentation

void core::scoring::rna::RNA_EnergyMethodOptions::initialize_from_options

(

)

References rna_base_pair_xy_filename_, core::scoring::suiteness_bonus, suiteness_bonus_, syn_G_potential_bonus_, and torsion_potential_.

Referenced by RNA_EnergyMethodOptions().

std::string core::scoring::rna::RNA_EnergyMethodOptions::rna_base_pair_xy_filename ( ) const

inline

Parameter for changing rna_base_pair_xy file name.

References rna_base_pair_xy_filename_.

Referenced by core::scoring::rna::RNA_LowResolutionPotentialCreator::create_energy_method().

void core::scoring::rna::RNA_EnergyMethodOptions::rna_base_pair_xy_filename ( std::string const &  setting )

inline

References rna_base_pair_xy_filename_.

void core::scoring::rna::RNA_EnergyMethodOptions::show

(

std::ostream &

out

)

const

References rna_base_pair_xy_filename_, suiteness_bonus_, syn_G_potential_bonus_, and torsion_potential_.

Referenced by core::scoring::rna::operator<<().

std::string core::scoring::rna::RNA_EnergyMethodOptions::suiteness_bonus ( ) const

inline

Parameter for changing suiteness_bonus directory name.

References suiteness_bonus_.

void core::scoring::rna::RNA_EnergyMethodOptions::suiteness_bonus ( std::string const &  setting )

inline

References suiteness_bonus_.

core::Real core::scoring::rna::RNA_EnergyMethodOptions::syn_G_potential_bonus ( ) const

inline

Parameter for adjusting syn-G potential level in RNA_TorsionPotential.

References syn_G_potential_bonus_.

void core::scoring::rna::RNA_EnergyMethodOptions::syn_G_potential_bonus ( core::Real  setting )

inline

References syn_G_potential_bonus_.

std::string core::scoring::rna::RNA_EnergyMethodOptions::torsion_potential ( ) const

inline

Parameter for changing torsion_potential directory name.

References torsion_potential_.

Referenced by core::scoring::rna::RNA_TorsionPotential::RNA_TorsionPotential().

void core::scoring::rna::RNA_EnergyMethodOptions::torsion_potential ( std::string const &  setting )

inline

References torsion_potential_.

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  out, const RNA_EnergyMethodOptions &  options  )

friend

bool operator== ( RNA_EnergyMethodOptions const &  a, RNA_EnergyMethodOptions const &  b  )

friend

Member Data Documentation

std::string core::scoring::rna::RNA_EnergyMethodOptions::rna_base_pair_xy_filename_

private

Referenced by initialize_from_options(), core::scoring::rna::operator==(), rna_base_pair_xy_filename(), and show().

std::string core::scoring::rna::RNA_EnergyMethodOptions::suiteness_bonus_

private

Referenced by initialize_from_options(), core::scoring::rna::operator==(), show(), and suiteness_bonus().

core::Real core::scoring::rna::RNA_EnergyMethodOptions::syn_G_potential_bonus_

private

Referenced by initialize_from_options(), core::scoring::rna::operator==(), show(), and syn_G_potential_bonus().

std::string core::scoring::rna::RNA_EnergyMethodOptions::torsion_potential_

private

Referenced by initialize_from_options(), core::scoring::rna::operator==(), show(), and torsion_potential().

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The documentation for this class was generated from the following files:

• src/core/scoring/rna/RNA_EnergyMethodOptions.hh
• src/core/scoring/rna/RNA_EnergyMethodOptions.cc