core::pose::toolbox::AtomLevelDomainMap Member List

This is the complete list of members for core::pose::toolbox::AtomLevelDomainMap, including all inherited members.

apply_allow_insert_res(utility::vector1< Size > const &allow_insert_res)	core::pose::toolbox::AtomLevelDomainMap	private
atom_id_mapper() const	core::pose::toolbox::AtomLevelDomainMap	inline
atom_id_mapper_	core::pose::toolbox::AtomLevelDomainMap	private
AtomLevelDomainMap(core::pose::Pose const &pose, bool const map_to_vanilla_pose=false, utility::vector1< Size > const &allow_insert_res=utility::vector1< Size >())	core::pose::toolbox::AtomLevelDomainMap
calculate_atom_id_domain_map(core::pose::Pose const &pose) const	core::pose::toolbox::AtomLevelDomainMap
clone() const	core::pose::toolbox::AtomLevelDomainMap	virtual
disallow_movement_of_input_res(core::pose::Pose const &pose)	core::pose::toolbox::AtomLevelDomainMap
domain_map_	core::pose::toolbox::AtomLevelDomainMap	private
get(Size const &i) const	core::pose::toolbox::AtomLevelDomainMap
get(core::id::AtomID const &atom_id) const	core::pose::toolbox::AtomLevelDomainMap
get(core::id::TorsionID const &torsion_id, core::conformation::Conformation const &conformation) const	core::pose::toolbox::AtomLevelDomainMap
get_domain(Size const &i) const	core::pose::toolbox::AtomLevelDomainMap
get_domain(core::id::AtomID const &atom_id) const	core::pose::toolbox::AtomLevelDomainMap
get_domain(core::id::NamedAtomID const &named_atom_id, core::pose::Pose const &pose) const	core::pose::toolbox::AtomLevelDomainMap
get_jump(Size const &jump_number, core::conformation::Conformation const &conformation) const	core::pose::toolbox::AtomLevelDomainMap
has_domain(core::id::AtomID const &atom_id) const	core::pose::toolbox::AtomLevelDomainMap
initialize(core::pose::Pose const &pose, bool const map_to_vanilla_pose, utility::vector1< Size > const &allow_insert_res)	core::pose::toolbox::AtomLevelDomainMap	private
renumber_after_variant_changes(core::pose::Pose const &pose)	core::pose::toolbox::AtomLevelDomainMap
set(Size const &i, bool const &setting)	core::pose::toolbox::AtomLevelDomainMap
set(core::id::NamedAtomID const &named_atom_id, core::pose::Pose const &pose, bool const &setting)	core::pose::toolbox::AtomLevelDomainMap
set(core::id::AtomID const &atom_id, bool const &setting)	core::pose::toolbox::AtomLevelDomainMap
set(bool const &setting)	core::pose::toolbox::AtomLevelDomainMap
set_domain(Size const &i, Size const &setting)	core::pose::toolbox::AtomLevelDomainMap
set_domain(core::id::AtomID const &atom_id, Size const &setting, bool ok_if_missing=false)	core::pose::toolbox::AtomLevelDomainMap
set_domain(core::id::NamedAtomID const &atom_id, core::pose::Pose const &pose, Size const &setting)	core::pose::toolbox::AtomLevelDomainMap
set_domain(Size const &setting)	core::pose::toolbox::AtomLevelDomainMap
set_fixed_if_moving(Size const &i)	core::pose::toolbox::AtomLevelDomainMap
set_fixed_if_moving(core::id::AtomID const &atom_id)	core::pose::toolbox::AtomLevelDomainMap
set_phosphate(core::Size const &i, core::pose::Pose const &pose, bool const &setting)	core::pose::toolbox::AtomLevelDomainMap
set_phosphate_domain(core::Size const &i, core::pose::Pose const &pose, Size const &setting)	core::pose::toolbox::AtomLevelDomainMap
set_sugar(core::Size const &i, core::pose::Pose const &pose, bool const &setting)	core::pose::toolbox::AtomLevelDomainMap
set_sugar_domain(core::Size const &i, core::pose::Pose const &pose, Size const &setting)	core::pose::toolbox::AtomLevelDomainMap
setup_movemap(core::kinematics::MoveMap &mm, core::pose::Pose const &pose, bool const &check_for_vrt_phos=false)	core::pose::toolbox::AtomLevelDomainMap
show(std::ostream &out=std::cout) const	core::pose::toolbox::AtomLevelDomainMap
update_to_move_chunks_with_domain(Size const &domain)	core::pose::toolbox::AtomLevelDomainMap
update_to_move_internal_phosphates(core::pose::Pose const &pose)	core::pose::toolbox::AtomLevelDomainMap	private
update_to_not_move_last_virtual_residue(core::pose::Pose const &pose)	core::pose::toolbox::AtomLevelDomainMap	private
update_to_not_move_virtual_o2prime(core::pose::Pose const &pose)	core::pose::toolbox::AtomLevelDomainMap	private
update_to_not_move_virtual_phosphates(core::pose::Pose const &pose)	core::pose::toolbox::AtomLevelDomainMap	private