protocols::loop_modeling::LoopProtocol Member List

This is the complete list of members for protocols::loop_modeling::LoopProtocol, including all inherited members.

::LoopModelerTests class	protocols::loop_modeling::LoopProtocol	friend
add_acceptance_check(string name="loop_move")	protocols::loop_modeling::LoopProtocol
add_child(ChildSubclassOP child)	protocols::loop_modeling::LoopMover	inlineprotected
add_filter(protocols::filters::FilterOP filter)	protocols::loop_modeling::LoopProtocol
add_mover(LoopMoverOP mover)	protocols::loop_modeling::LoopProtocol
add_refiner(LoopMoverOP refiner)	protocols::loop_modeling::LoopProtocol
apply(Pose &pose) override	protocols::loop_modeling::LoopMover	virtual
attempt_loop_move(Pose &pose, core::Size i, core::Size j, core::Size k)	protocols::loop_modeling::LoopProtocol	private
clear_children()	protocols::loop_modeling::LoopMover	protected
clear_info()	protocols::moves::Mover	inlinevirtual
clear_movers()	protocols::loop_modeling::LoopProtocol
clear_movers_and_refiners()	protocols::loop_modeling::LoopProtocol
clear_refiners()	protocols::loop_modeling::LoopProtocol
clone() const	protocols::moves::Mover	virtual
complex_type_generator_for_loop_protocol(utility::tag::XMLSchemaDefinition &xsd)	protocols::loop_modeling::LoopProtocol	static
count_children() const	protocols::loop_modeling::LoopMover	protected
create()	protocols::moves::Mover	virtual
define_composition_schema(utility::tag::XMLSchemaDefinition &xsd, utility::tag::XMLSchemaComplexTypeGenerator &ct_gen, utility::tag::XMLSchemaSimpleSubelementList &subelements)	protocols::loop_modeling::LoopMover	static
do_apply(Pose &pose) override	protocols::loop_modeling::LoopProtocol	protectedvirtual
protocols::loop_modeling::LoopMover::do_apply(Pose &pose, Loop const &loop)	protocols::loop_modeling::LoopMover	protectedvirtual
final_temp_	protocols::loop_modeling::LoopProtocol	private
finish_protocol(Pose &pose)	protocols::loop_modeling::LoopProtocol	private
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_children() const	protocols::loop_modeling::LoopMover	protected
get_children_names(utility::vector1< std::string > &names, std::string indent="") const	protocols::loop_modeling::LoopMover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_logger() const	protocols::loop_modeling::LoopProtocol
get_loop(core::Size index) const	protocols::loop_modeling::LoopMover
get_loops()	protocols::loop_modeling::LoopMover
get_loops() const	protocols::loop_modeling::LoopMover
get_mover_cycles() const	protocols::loop_modeling::LoopProtocol
get_name() const override	protocols::loop_modeling::LoopProtocol	virtual
get_native_pose() const	protocols::moves::Mover
get_score_function() const	protocols::loop_modeling::LoopProtocol
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_sfxn_cycles() const	protocols::loop_modeling::LoopProtocol
get_temp_cycles() const	protocols::loop_modeling::LoopProtocol
get_tool(std::string key) const	protocols::loop_modeling::LoopMover	inline
get_tool(std::string key, ToolTypeOP fallback) const	protocols::loop_modeling::LoopMover	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
initial_temp_	protocols::loop_modeling::LoopProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
logger_	protocols::loop_modeling::LoopProtocol	private
loop_protocol_attlist()	protocols::loop_modeling::LoopProtocol	static
LoopMover()	protocols::loop_modeling::LoopMover
LoopProtocol()	protocols::loop_modeling::LoopProtocol
mark_as_default()	protocols::loop_modeling::LoopProtocol
mark_as_test_run()	protocols::loop_modeling::LoopProtocol
monte_carlo_	protocols::loop_modeling::LoopProtocol	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_cycles_	protocols::loop_modeling::LoopProtocol	private
mover_name()	protocols::loop_modeling::LoopProtocol	static
movers_	protocols::loop_modeling::LoopProtocol	private
name()	protocols::moves::Mover	inlinestatic
original_cst_weight_	protocols::loop_modeling::LoopProtocol	private
original_rama2b_weight_	protocols::loop_modeling::LoopProtocol	private
original_rama_weight_	protocols::loop_modeling::LoopProtocol	private
original_repulsive_weight_	protocols::loop_modeling::LoopProtocol	private
original_sfxn_weights_	protocols::loop_modeling::LoopProtocol	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override	protocols::loop_modeling::LoopProtocol	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
protocol_	protocols::loop_modeling::LoopProtocol	private
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::loop_modeling::LoopProtocol	static
ramp_score_function(core::Size iteration)	protocols::loop_modeling::LoopProtocol	private
ramp_sfxn_cst_	protocols::loop_modeling::LoopProtocol	private
ramp_sfxn_rama_	protocols::loop_modeling::LoopProtocol	private
ramp_sfxn_rep_	protocols::loop_modeling::LoopProtocol	private
ramp_temp_	protocols::loop_modeling::LoopProtocol	private
ramp_temperature(core::Size iteration)	protocols::loop_modeling::LoopProtocol	private
refiners_	protocols::loop_modeling::LoopProtocol	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
remove_child(LoopMoverOP child)	protocols::loop_modeling::LoopMover	protected
request_fold_tree() const	protocols::loop_modeling::LoopMover	virtual
reset_status()	protocols::moves::Mover
scale_temp_cycles_	protocols::loop_modeling::LoopProtocol	private
set_cst_term_ramping(bool value)	protocols::loop_modeling::LoopProtocol
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_loop(Loop const &loop)	protocols::loop_modeling::LoopMover
set_loops(LoopsOP loops)	protocols::loop_modeling::LoopMover
set_loops(Loops const &loops)	protocols::loop_modeling::LoopMover
set_mover_cycles(core::Size x)	protocols::loop_modeling::LoopProtocol
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_rama_term_ramping(bool value)	protocols::loop_modeling::LoopProtocol
set_repulsive_term_ramping(bool value)	protocols::loop_modeling::LoopProtocol
set_score_function(core::scoring::ScoreFunctionOP score_function)	protocols::loop_modeling::LoopProtocol
set_sfxn_cycles(core::Size x)	protocols::loop_modeling::LoopProtocol
set_temp_cycles(core::Size x, bool times_loop_length=false)	protocols::loop_modeling::LoopProtocol
set_temperature_ramping(bool value)	protocols::loop_modeling::LoopProtocol
set_temperature_schedule(Real start, Real stop)	protocols::loop_modeling::LoopProtocol
set_tool(std::string key, ToolTypeOP value)	protocols::loop_modeling::LoopMover	inline
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_fold_tree(Pose &pose, LoopsCOP loops, FoldTreeRequest request)	protocols::loop_modeling::LoopMover	static
sfxn_cycles_	protocols::loop_modeling::LoopProtocol	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
start_protocol(Pose &pose)	protocols::loop_modeling::LoopProtocol	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
temp_cycles_	protocols::loop_modeling::LoopProtocol	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
test_run_	protocols::loop_modeling::LoopProtocol	private
trust_fold_tree()	protocols::loop_modeling::LoopMover
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
was_successful() const	protocols::loop_modeling::LoopMover
was_successful(bool value)	protocols::loop_modeling::LoopMover	inline
~LoopProtocol() override	protocols::loop_modeling::LoopProtocol