This is the complete list of members for protocols::ddg::ddGMover, including all inherited members.

apply(core::pose::Pose &pose) override	protocols::ddg::ddGMover	virtual
average(utility::vector1< core::Real > &scores_to_average)	protocols::ddg::ddGMover	private
average_score_components(ObjexxFCL::FArray2D< core::Real > &scores_to_average, utility::vector1< core::Real > &averaged_scores)	protocols::ddg::ddGMover	private
calculate_interface_unbound_energy(core::pose::Pose &p, core::scoring::ScoreFunctionOP s, core::pack::task::PackerTaskOP pt)	protocols::ddg::ddGMover	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
create()	protocols::moves::Mover	virtual
cst_set_	protocols::ddg::ddGMover	private
dbg_output_	protocols::ddg::ddGMover	private
ddG()	protocols::ddg::ddGMover
ddGMover()	protocols::ddg::ddGMover
ddGMover(core::scoring::ScoreFunctionOP s, core::scoring::ScoreFunctionOP m, utility::vector1< core::chemical::AA > const &res_to_mutate)	protocols::ddg::ddGMover
debug_output(bool truefalse)	protocols::ddg::ddGMover
dmp_pdb_	protocols::ddg::ddGMover	private
dump_pdbs(bool truefalse)	protocols::ddg::ddGMover
find_nbrs(core::pose::Pose &p, utility::vector1< int > &mutation_position, core::Real radii)	protocols::ddg::ddGMover	private
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_delta_energy_components()	protocols::ddg::ddGMover
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_min_cst()	protocols::ddg::ddGMover
get_mutant_averaged_score_components()	protocols::ddg::ddGMover
get_mutant_averaged_totals()	protocols::ddg::ddGMover
get_mutant_min_score_components()	protocols::ddg::ddGMover
get_mutant_min_totals()	protocols::ddg::ddGMover
get_name() const override	protocols::ddg::ddGMover	virtual
get_native_pose() const	protocols::moves::Mover
get_num_decoys_used_in_calculations()	protocols::ddg::ddGMover
get_scorefunction_header(core::scoring::ScoreFunctionOP sfxn, utility::vector1< std::string > &components)	protocols::ddg::ddGMover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
get_wt_averaged_score_components()	protocols::ddg::ddGMover
get_wt_averaged_totals()	protocols::ddg::ddGMover
get_wt_min_score_components()	protocols::ddg::ddGMover
get_wt_min_totals()	protocols::ddg::ddGMover
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
initialize_rotamer_behavior_for_residue_level_task(core::pack::task::ResidueLevelTask &rltask) const	protocols::ddg::ddGMover	private
initialize_task_level_behavior(core::pack::task::PackerTaskOP packer_task)	protocols::ddg::ddGMover	private
interface_ddg_	protocols::ddg::ddGMover	private
is_any_pdb_empty(core::pose::Pose const &pose, std::string const &mutant_traj, bool const output_silent) const	protocols::ddg::ddGMover	private
is_complete(ObjexxFCL::FArray2D< core::Real > to_check)	protocols::ddg::ddGMover	private
is_interface_ddg(bool truefalse)	protocols::ddg::ddGMover
is_interface_ddg()	protocols::ddg::ddGMover
is_mutant_calc_complete()	protocols::ddg::ddGMover
is_properly_initialized(core::pose::Pose &pose)	protocols::ddg::ddGMover
is_wt_calc_complete()	protocols::ddg::ddGMover
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
mean_	protocols::ddg::ddGMover	private
min_	protocols::ddg::ddGMover	private
min_cst_	protocols::ddg::ddGMover	private
min_cst_mut_types_	protocols::ddg::ddGMover	private
min_cst_set_mut_	protocols::ddg::ddGMover	private
min_cst_set_wt_	protocols::ddg::ddGMover	private
min_cst_sfxn_	protocols::ddg::ddGMover	private
min_cst_sfxn_no_cst_weight_	protocols::ddg::ddGMover	private
min_cst_wt_types_	protocols::ddg::ddGMover	private
minimization_score_function()	protocols::ddg::ddGMover
minimize_with_constraints(core::pose::Pose &pose, core::scoring::ScoreFunctionOP s, core::pack::task::PackerTaskOP pt)	protocols::ddg::ddGMover	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mutant_components_	protocols::ddg::ddGMover	private
mutant_score_components(ObjexxFCL::FArray2D< core::Real > msc)	protocols::ddg::ddGMover
mutant_score_components()	protocols::ddg::ddGMover
mutant_unbound_components_	protocols::ddg::ddGMover	private
mutants_	protocols::ddg::ddGMover	private
mutation_label(core::pose::Pose const &pose) const	protocols::ddg::ddGMover
name()	protocols::moves::Mover	inlinestatic
natives_	protocols::ddg::ddGMover	private
nbr_cutoff_	protocols::ddg::ddGMover	private
neighbor_cutoff(core::Real cutoff)	protocols::ddg::ddGMover
neighbor_cutoff()	protocols::ddg::ddGMover
neighborhood_of_mutations(core::pose::Pose const &pose, utility::vector1< int > const &mutations) const	protocols::ddg::ddGMover	private
num_decoys_used_in_calculations_	protocols::ddg::ddGMover	private
num_iterations(int num)	protocols::ddg::ddGMover
num_iterations()	protocols::ddg::ddGMover
num_iterations_	protocols::ddg::ddGMover	private
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
print_verbose_ddgs(utility::vector1< core::pose::Pose > mut, utility::vector1< core::pose::Pose > wt, core::scoring::ScoreFunctionOP sfxn, bool mean, bool min, std::string filename)	protocols::ddg::ddGMover	private
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
relax_wildtype_structure(core::pose::Pose &pose, protocols::scoring::Interface &protein_interface, std::string const &wt_traj, bool output_silent)	protocols::ddg::ddGMover	private
repack_cst_set_mut_	protocols::ddg::ddGMover	private
repack_cst_set_wt_	protocols::ddg::ddGMover	private
repack_mut_types_	protocols::ddg::ddGMover	private
repack_wt_types_	protocols::ddg::ddGMover	private
reset_status()	protocols::moves::Mover
residues_to_mutate(utility::vector1< core::chemical::AA > residues)	protocols::ddg::ddGMover
residues_to_mutate()	protocols::ddg::ddGMover
residues_to_mutate_	protocols::ddg::ddGMover	private
restrict_to_nbrhood_	protocols::ddg::ddGMover	private
restrict_to_nbrs(bool truefalse)	protocols::ddg::ddGMover
restrict_to_nbrs()	protocols::ddg::ddGMover
score_function(core::scoring::ScoreFunctionOP s)	protocols::ddg::ddGMover
score_function()	protocols::ddg::ddGMover
scorefxn_	protocols::ddg::ddGMover	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_mean(bool truefalse)	protocols::ddg::ddGMover
set_min(bool truefalse)	protocols::ddg::ddGMover
set_min_cst(bool truefalse)	protocols::ddg::ddGMover
set_minimization_score_function(core::scoring::ScoreFunctionOP s)	protocols::ddg::ddGMover
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_num_decoys_used_in_calculations(core::Real num_lowe_used)	protocols::ddg::ddGMover
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_constraints(core::pose::Pose &pose, core::scoring::ScoreFunctionOP sfxn, float const cst_tol, bool all_but_mut_site, utility::vector1< char > &constraints_at_pos)	protocols::ddg::ddGMover	private
setup_packer_task_for_mutations(core::pose::Pose const &pose, protocols::scoring::Interface const &protein_interface, utility::vector1< int > const &mutations, core::pack::task::PackerTaskOP packer_task)	protocols::ddg::ddGMover	private
setup_packertask(core::pack::task::PackerTaskOP pt, core::pose::Pose &p)	protocols::ddg::ddGMover	private
setup_repack_constraints(core::pose::Pose &pose, core::scoring::ScoreFunctionOP sfxn, bool all_but_mut_site, utility::vector1< char > &constraints_at_pos)	protocols::ddg::ddGMover	private
setup_rotamer_constraints(core::pose::Pose &p, core::scoring::ScoreFunction &s, utility::vector1< int > &mutation_position, bool all_but_mutation_site, utility::vector1< char > &constraints_at_pos)	protocols::ddg::ddGMover	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
store_energies(ObjexxFCL::FArray2D< core::Real > &two_d_e_arrays, core::scoring::ScoreFunction &s, core::pose::Pose &p, int next_index, int size_to_expect)	protocols::ddg::ddGMover	private
Strings typedef	protocols::moves::Mover
sum(ddGs &scores_to_sum)	protocols::ddg::ddGMover	private
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
use_mean()	protocols::ddg::ddGMover
use_min()	protocols::ddg::ddGMover
wt_components_	protocols::ddg::ddGMover	private
wt_score_components(ObjexxFCL::FArray2D< core::Real > wsc)	protocols::ddg::ddGMover
wt_score_components()	protocols::ddg::ddGMover
wt_unbound_components_	protocols::ddg::ddGMover	private
wt_unbound_score_components(ObjexxFCL::FArray2D< core::Real > wusc)	protocols::ddg::ddGMover
wt_unbound_score_components()	protocols::ddg::ddGMover
~ddGMover() override	protocols::ddg::ddGMover