protocols::denovo_design::architects::HelixArchitect Class Reference

Architect for helices. More...

#include <HelixArchitect.hh>

Inheritance diagram for protocols::denovo_design::architects::HelixArchitect:

Public Member Functions
	HelixArchitect (std::string const &id_value)
	~HelixArchitect () override
std::string	type () const override
	simply returns the name of this type of architect More...
DeNovoArchitectOP	clone () const override
StructureDataOP	design (core::pose::Pose const &pose, core::Real &random) const override
void	set_lengths (std::string const &lengths_str)
void	set_lengths (Lengths const &lengths)
components::SegmentCOPs const &	motifs () const
	Returns the list of allowed segments; One of these will be chosen during design. More...
components::SegmentCOPs::const_iterator	motifs_begin () const
components::SegmentCOPs::const_iterator	motifs_end () const
Public Member Functions inherited from protocols::denovo_design::architects::DeNovoArchitect
	DeNovoArchitect (std::string const &id)
	~DeNovoArchitect () override
components::StructureDataOP	apply (core::pose::Pose const &pose) const
Public Member Functions inherited from protocols::denovo_design::architects::StructureArchitect
	StructureArchitect (std::string const &id)
	~StructureArchitect () override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)
std::string const &	id () const
void	set_id (std::string const &new_id)

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
Static Public Member Functions inherited from protocols::denovo_design::architects::DeNovoArchitect
static void	add_common_denovo_architect_attributes (utility::tag::AttributeList &attlist)
Static Public Member Functions inherited from protocols::denovo_design::architects::StructureArchitect
static void	attributes_for_parse_my_tag (utility::tag::AttributeList &attlist)

Protected Member Functions
void	parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override
	Configuration by XML. More...

Private Attributes
components::SegmentCOPs	motifs_
Lengths	lengths_

Additional Inherited Members
Public Types inherited from protocols::denovo_design::architects::DeNovoArchitect
typedef components::StructureDataOP	StructureDataOP
Static Public Attributes inherited from protocols::denovo_design::architects::DeNovoArchitect
static std::string const	DATA_MAP_NAME = "DeNovoArchitects"

Detailed Description

Architect for helices.

Constructor & Destructor Documentation

protocols::denovo_design::architects::HelixArchitect::HelixArchitect

(

std::string const &

id_value

)

protocols::denovo_design::architects::HelixArchitect::~HelixArchitect ( )

overridedefault

Member Function Documentation

static std::string protocols::denovo_design::architects::HelixArchitect::class_name ( )

inlinestatic

Referenced by protocols::denovo_design::architects::HelixArchitectCreator::keyname(), provide_xml_schema(), and type().

DeNovoArchitectOP protocols::denovo_design::architects::HelixArchitect::clone ( ) const

overridevirtual

Implements protocols::denovo_design::architects::DeNovoArchitect.

DeNovoArchitect::StructureDataOP protocols::denovo_design::architects::HelixArchitect::design ( core::pose::Pose const &  pose, core::Real &  random  ) const

overridevirtual

Implements protocols::denovo_design::architects::DeNovoArchitect.

References protocols::denovo_design::extract_int(), motifs_, protocols::TR(), and type().

components::SegmentCOPs const & protocols::denovo_design::architects::HelixArchitect::motifs

(

)

const

Returns the list of allowed segments; One of these will be chosen during design.

References motifs_.

components::SegmentCOPs::const_iterator protocols::denovo_design::architects::HelixArchitect::motifs_begin

(

)

const

References motifs_.

components::SegmentCOPs::const_iterator protocols::denovo_design::architects::HelixArchitect::motifs_end

(

)

const

References motifs_.

void protocols::denovo_design::architects::HelixArchitect::parse_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data  )

overrideprotectedvirtual

Configuration by XML.

Implements protocols::denovo_design::architects::DeNovoArchitect.

References set_lengths().

void protocols::denovo_design::architects::HelixArchitect::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::denovo_design::architects::DeNovoArchitect::add_common_denovo_architect_attributes(), class_name(), and protocols::denovo_design::architects::DeNovoArchitectFactory::xsd_architect_type_definition_w_attributes().

Referenced by protocols::denovo_design::architects::HelixArchitectCreator::provide_xml_schema().

void protocols::denovo_design::architects::HelixArchitect::set_lengths

(

std::string const &

lengths_str

)

Referenced by parse_tag().

void protocols::denovo_design::architects::HelixArchitect::set_lengths

(

Lengths const &

lengths

)

References core::scoring::abego, lengths_, and motifs_.

std::string protocols::denovo_design::architects::HelixArchitect::type ( ) const

overridevirtual

simply returns the name of this type of architect

Implements protocols::denovo_design::architects::DeNovoArchitect.

References class_name().

Referenced by design().

Member Data Documentation

Lengths protocols::denovo_design::architects::HelixArchitect::lengths_

private

Referenced by set_lengths().

components::SegmentCOPs protocols::denovo_design::architects::HelixArchitect::motifs_

private

Referenced by design(), motifs(), motifs_begin(), motifs_end(), and set_lengths().

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The documentation for this class was generated from the following files:

• src/protocols/denovo_design/architects/HelixArchitect.hh
• src/protocols/denovo_design/architects/HelixArchitect.cc