| add_file_contents(std::string const &fname, std::string const &contents) | protocols::pack_daemon::DynamicAggregateFunction | |
| ArithmeticASTExpressionOP typedef | protocols::pack_daemon::DynamicAggregateFunction | |
| assign_state_energies_to_variables_and_subexpressions(StateEnergies const &state_energies, StateEnergies const &npd_properties, Entity const &entity, bool verbose=false) | protocols::pack_daemon::DynamicAggregateFunction | private |
| count_file_reads() | protocols::pack_daemon::DynamicAggregateFunction | protected |
| count_num_npd_properties() const | protocols::pack_daemon::DynamicAggregateFunction | private |
| create_scalar_and_vector_expression_variable_expressions(std::map< std::string, ArithmeticASTExpressionOP > const &scalar_expression_asts, std::map< std::string, std::list< std::string > > const &vector_variables, core::Size &count_state) | protocols::pack_daemon::DynamicAggregateFunction | private |
| create_state_variable_expressions(core::Size &count_state, core::Size &count_npd_index, core::Size &count_variable_index) | protocols::pack_daemon::DynamicAggregateFunction | private |
| create_variable_vector_expressions(core::Size &count_state, core::Size &count_npd_index, core::Size &count_variable_index) | protocols::pack_daemon::DynamicAggregateFunction | private |
| DynamicAggregateFunction() | protocols::pack_daemon::DynamicAggregateFunction | |
| Entity typedef | protocols::pack_daemon::DynamicAggregateFunction | |
| entity_funcs_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| entity_funcs_dec_line_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| evaluate(StateEnergies const &, StateEnergies const &npd_properties, Entity const &) override | protocols::pack_daemon::DynamicAggregateFunction | virtual |
| Expression typedef | protocols::pack_daemon::DynamicAggregateFunction | |
| expression_evaluation_order_by_name_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| ExpressionCOP typedef | protocols::pack_daemon::DynamicAggregateFunction | |
| ExpressionOP typedef | protocols::pack_daemon::DynamicAggregateFunction | |
| ExpressionValues typedef | protocols::pack_daemon::DynamicAggregateFunction | |
| file_contents_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| file_inputs_for_job(int job_index) const | protocols::pack_daemon::DynamicAggregateFunction | |
| files_for_state_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| fitness_exp_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| focused_iterative_vector_expression_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| function_expression(numeric::expression_parser::FunctionTokenCOP function, utility::vector1< ExpressionCOP > const &args) const | protocols::pack_daemon::DynamicAggregateFunction | |
| function_names_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| get_file_contents(std::string const &filename) | protocols::pack_daemon::DynamicAggregateFunction | protected |
| illegal_variable_names_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| initialize_scanner() | protocols::pack_daemon::DynamicAggregateFunction | private |
| MultistateAggregateFunction() | protocols::pack_daemon::MultistateAggregateFunction | inline |
| named_state_data_file_names_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| named_state_expression_map_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| npd_properties_for_state_variables_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| npd_property_expression_map_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| npd_property_vector_expression_map_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| npd_variable_indices_for_state_begin(core::Size state_id) const | protocols::pack_daemon::DynamicAggregateFunction | |
| npd_variable_indices_for_state_end(core::Size state_id) const | protocols::pack_daemon::DynamicAggregateFunction | |
| npd_variable_indices_for_states_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| num_entity_elements_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| num_npd_properties() const | protocols::pack_daemon::DynamicAggregateFunction | |
| num_npd_properties_for_state(core::Size state_id) const | protocols::pack_daemon::DynamicAggregateFunction | |
| num_states() const | protocols::pack_daemon::DynamicAggregateFunction | |
| parent typedef | protocols::pack_daemon::DynamicAggregateFunction | |
| process_ENTITY_FUNCTION_line(std::string const &line, core::Size line_number, std::istream &input_line) | protocols::pack_daemon::DynamicAggregateFunction | private |
| process_FITNESS_line(std::string const &line, core::Size line_number, std::istream &input_line, ArithmeticASTExpressionOP &fitness_expression_ast) | protocols::pack_daemon::DynamicAggregateFunction | private |
| process_NPD_PROPERTY_line(std::string const &line, core::Size line_number, std::istream &input_line) | protocols::pack_daemon::DynamicAggregateFunction | private |
| process_POSE_ENERGY_line(std::string const &line, core::Size line_number, std::istream &input_line) | protocols::pack_daemon::DynamicAggregateFunction | private |
| process_POSE_ENERGY_VECTOR_line(std::string const &line, core::Size line_number, std::istream &input_line) | protocols::pack_daemon::DynamicAggregateFunction | private |
| process_SCALAR_EXPRESSION_line(std::string const &line, core::Size line_number, std::istream &input_line, std::map< std::string, ArithmeticASTExpressionOP > &scalar_expression_asts) | protocols::pack_daemon::DynamicAggregateFunction | private |
| process_STATE_line(std::string const &line, core::Size line_number, std::istream &input_line) | protocols::pack_daemon::DynamicAggregateFunction | private |
| process_STATE_VECTOR_line(std::string const &line, core::Size line_number, std::istream &input_line, utility::vector1< std::pair< std::string, std::string > > &strucvec_filenames) | protocols::pack_daemon::DynamicAggregateFunction | private |
| process_VECTOR_EXPRESSION_line(std::string const &line, core::Size line_number, std::istream &input_line, std::map< std::string, std::pair< std::map< std::string, std::string >, ArithmeticASTExpressionOP > > &vector_expression_list) | protocols::pack_daemon::DynamicAggregateFunction | private |
| process_VECTOR_VARIABLE_line(std::string const &line, core::Size line_number, std::istream &input_line, std::map< std::string, std::list< std::string > > &vector_variables) | protocols::pack_daemon::DynamicAggregateFunction | private |
| read_all_variables_from_input_file(std::istream &input) | protocols::pack_daemon::DynamicAggregateFunction | |
| read_state_vector_file(std::string const &vec_varname, std::string const &fname, core::Size &n_vector_states) | protocols::pack_daemon::DynamicAggregateFunction | private |
| save_scalar_variable(std::string const &varname, core::Size line_number) | protocols::pack_daemon::DynamicAggregateFunction | private |
| save_vector_variable(std::string const &varname, core::Size line_number) | protocols::pack_daemon::DynamicAggregateFunction | private |
| scalar_expression_map_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| scalar_expressions_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| scalar_variable_names_dec_line_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| scanner_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| select_relevant_states(StateEnergies const &en, StateEnergies const &npd, Entity const &) override | protocols::pack_daemon::DynamicAggregateFunction | virtual |
| set_num_entity_elements(core::Size setting) | protocols::pack_daemon::DynamicAggregateFunction | |
| set_score_function(core::scoring::ScoreFunction const &sfxn) | protocols::pack_daemon::DynamicAggregateFunction | |
| sfxn_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| Size typedef | protocols::pack_daemon::DynamicAggregateFunction | |
| state_indices_for_state_vector_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| state_name(core::Size state_index) const | protocols::pack_daemon::DynamicAggregateFunction | |
| state_variable_name_2_state_index_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| state_variable_names_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| state_vector_data_file_names_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| state_vector_variable_names_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| state_vector_variables_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| StateEnergies typedef | protocols::pack_daemon::MultistateAggregateFunction | |
| StateIndices typedef | protocols::pack_daemon::MultistateAggregateFunction | |
| surrogate_expression_map_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| turn_expression_ASTs_into_expressions(std::map< std::string, ArithmeticASTExpressionOP > const &scalar_expression_asts, std::map< std::string, std::pair< std::map< std::string, std::string >, ArithmeticASTExpressionOP > > const &vector_expression_asts, ArithmeticASTExpressionOP fitness_expression_ast) | protocols::pack_daemon::DynamicAggregateFunction | private |
| variable_expression(numeric::expression_parser::ArithmeticASTValue const &) const | protocols::pack_daemon::DynamicAggregateFunction | |
| variable_expressions_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| variable_expressions_for_npd_properties_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| variable_expressions_for_states_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| variable_name_2_variable_exp_index_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| variable_names_dec_line_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| VariableExpression typedef | protocols::pack_daemon::DynamicAggregateFunction | |
| VariableExpressionCOP typedef | protocols::pack_daemon::DynamicAggregateFunction | |
| VariableExpressionOP typedef | protocols::pack_daemon::DynamicAggregateFunction | |
| vector_expression_map_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| vector_variable_names_dec_line_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| verify_variable_name_or_throw(std::string const &vname, std::string const &command_name, std::string const &line, core::Size line_number) | protocols::pack_daemon::DynamicAggregateFunction | private |
| verify_vector_arguments(std::string const &fname, utility::vector1< ExpressionCOP > const &args, core::Size expected_nargs) const | protocols::pack_daemon::DynamicAggregateFunction | private |
| vfuncs_ | protocols::pack_daemon::DynamicAggregateFunction | private |
| ~DynamicAggregateFunction() override | protocols::pack_daemon::DynamicAggregateFunction | |
| ~MultistateAggregateFunction() override | protocols::pack_daemon::MultistateAggregateFunction | |
1.8.7