protocols::antibody::design::GeneralAntibodyModeler Member List

This is the complete list of members for protocols::antibody::design::GeneralAntibodyModeler, including all inherited members.

ab_dock_chains(std::string ab_dock_chains)	protocols::antibody::design::GeneralAntibodyModeler
ab_dock_chains_	protocols::antibody::design::GeneralAntibodyModeler	private
ab_info_	protocols::antibody::design::GeneralAntibodyModeler	private
apply_A_LH_foldtree(core::pose::Pose &pose) const	protocols::antibody::design::GeneralAntibodyModeler
atom_pair_weight_	protocols::antibody::design::GeneralAntibodyModeler	private
backrub_cdrs(core::pose::Pose &pose, bool min_sc=true, bool include_neighbor_sc=true) const	protocols::antibody::design::GeneralAntibodyModeler
cdr_overhang(CDRNameEnum const cdr, core::Size const overhang)	protocols::antibody::design::GeneralAntibodyModeler
clone() const	protocols::antibody::design::GeneralAntibodyModeler
cmd_line_operation_	protocols::antibody::design::GeneralAntibodyModeler	private
dock_high_res(core::pose::Pose &pose, core::Size first_cycle=4, core::Size second_cycle=45) const	protocols::antibody::design::GeneralAntibodyModeler
dock_low_res(core::pose::Pose &pose, bool pack_interface=false) const	protocols::antibody::design::GeneralAntibodyModeler
docking_scorefxn_high_	protocols::antibody::design::GeneralAntibodyModeler	private
docking_scorefxn_low_	protocols::antibody::design::GeneralAntibodyModeler	private
extend_CDR(core::pose::Pose &pose, CDRNameEnum cdr) const	protocols::antibody::design::GeneralAntibodyModeler
GeneralAntibodyModeler(AntibodyInfoOP ab_info)	protocols::antibody::design::GeneralAntibodyModeler
GeneralAntibodyModeler(GeneralAntibodyModeler const &src)	protocols::antibody::design::GeneralAntibodyModeler
get_cdr_loop_with_overhang(core::pose::Pose const &pose, CDRNameEnum cdr) const	protocols::antibody::design::GeneralAntibodyModeler
get_cdr_loops(core::pose::Pose const &pose) const	protocols::antibody::design::GeneralAntibodyModeler
get_cdr_loops_with_overhang(core::pose::Pose const &pose) const	protocols::antibody::design::GeneralAntibodyModeler
get_cdrs_movemap_with_overhang(core::pose::Pose &pose, bool min_bb=true, bool min_sc=true, bool include_neighbor_sc=true, bool include_neighbor_bb=false) const	protocols::antibody::design::GeneralAntibodyModeler
get_dock_chains() const	protocols::antibody::design::GeneralAntibodyModeler
get_movemap_from_task(core::pose::Pose const &pose, core::pack::task::PackerTaskCOP task) const	protocols::antibody::design::GeneralAntibodyModeler
interface_detection_dis(core::Real interface_distance)	protocols::antibody::design::GeneralAntibodyModeler
interface_detection_dis() const	protocols::antibody::design::GeneralAntibodyModeler	inline
interface_dis_	protocols::antibody::design::GeneralAntibodyModeler	private
interface_tf_	protocols::antibody::design::GeneralAntibodyModeler	private
loops_operation_	protocols::antibody::design::GeneralAntibodyModeler	private
min_scorefxn_	protocols::antibody::design::GeneralAntibodyModeler	private
minimize_cdrs(core::pose::Pose &pose, bool min_sc=true, bool include_neighbor_sc=true, bool min_interface=false, bool cartmin=false, bool use_talaris_cartmin=false) const	protocols::antibody::design::GeneralAntibodyModeler
minimize_interface(core::pose::Pose &pose, bool min_interface_sc=true) const	protocols::antibody::design::GeneralAntibodyModeler
model_cdrs_	protocols::antibody::design::GeneralAntibodyModeler	private
neighbor_detection_dis(core::Real neighbor_distance)	protocols::antibody::design::GeneralAntibodyModeler
neighbor_detection_dis() const	protocols::antibody::design::GeneralAntibodyModeler	inline
neighbor_dis_	protocols::antibody::design::GeneralAntibodyModeler	private
overhangs_	protocols::antibody::design::GeneralAntibodyModeler	private
read_command_line_options()	protocols::antibody::design::GeneralAntibodyModeler	private
relax_cdrs(core::pose::Pose &pose, bool include_neighbor_sc=true, bool starting_coordinate_constraints=false, bool min_interface=false, bool dualspace=false, core::Size repeats=5) const	protocols::antibody::design::GeneralAntibodyModeler
relax_interface(core::pose::Pose &pose, bool min_interface_sc=true) const	protocols::antibody::design::GeneralAntibodyModeler
repack_antibody_interface(core::pose::Pose &pose) const	protocols::antibody::design::GeneralAntibodyModeler
repack_antigen_ab_interface(core::pose::Pose &pose) const	protocols::antibody::design::GeneralAntibodyModeler
repack_antigen_interface(core::pose::Pose &pose) const	protocols::antibody::design::GeneralAntibodyModeler
repack_cdrs(core::pose::Pose &pose, bool include_neighbor_sc=true)	protocols::antibody::design::GeneralAntibodyModeler
reset_task_factory()	protocols::antibody::design::GeneralAntibodyModeler
restrict_design_operation_	protocols::antibody::design::GeneralAntibodyModeler	private
scorefxn_	protocols::antibody::design::GeneralAntibodyModeler	private
set_cdr(CDRNameEnum const cdr, bool setting)	protocols::antibody::design::GeneralAntibodyModeler
set_cdr_only(CDRNameEnum const cdr, bool setting)	protocols::antibody::design::GeneralAntibodyModeler
set_cdr_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool setting)	protocols::antibody::design::GeneralAntibodyModeler
set_cdrs(utility::vector1< bool > cdrs)	protocols::antibody::design::GeneralAntibodyModeler
set_defaults()	protocols::antibody::design::GeneralAntibodyModeler	private
set_dock_high_res_scorefunction(core::scoring::ScoreFunctionCOP scorefxn)	protocols::antibody::design::GeneralAntibodyModeler
set_dock_low_res_scorefunction(core::scoring::ScoreFunctionCOP scorefxn)	protocols::antibody::design::GeneralAntibodyModeler
set_overhang(core::Size const overhang)	protocols::antibody::design::GeneralAntibodyModeler
set_scorefunction(core::scoring::ScoreFunctionCOP scorefxn)	protocols::antibody::design::GeneralAntibodyModeler
set_scorefunction_min(core::scoring::ScoreFunctionCOP scorefxn)	protocols::antibody::design::GeneralAntibodyModeler
set_task_factory(core::pack::task::TaskFactoryOP tf)	protocols::antibody::design::GeneralAntibodyModeler
setup_scorefxns()	protocols::antibody::design::GeneralAntibodyModeler	private
setup_task_operations()	protocols::antibody::design::GeneralAntibodyModeler	private
tf_	protocols::antibody::design::GeneralAntibodyModeler	private
tf_set_	protocols::antibody::design::GeneralAntibodyModeler	private
~GeneralAntibodyModeler() override	protocols::antibody::design::GeneralAntibodyModeler