#include <CS2ndShift.hh>

Public Member Functions
	CS2ndShift ()

	CS2ndShift (CSTalosIO &input_data, bool use_sslimit)

utility::vector1 < utility::vector1< std::pair < core::Size, core::Real > > >	shifts ()

Private Member Functions
std::map< char, std::map < std::string, core::Real > >	read_adjust_table (std::string const &file_name)

std::map< char, std::map < std::string, std::pair < core::Real, core::Real > > >	read_sslimit_table (std::string const &file_name)

std::string	also_check_fix_disulf (std::string instring)

Private Attributes
utility::vector1 < utility::vector1< std::pair < core::Size, core::Real > > >	secondary_shifts_

Constructor & Destructor Documentation

protocols::frag_picker::CS2ndShift::CS2ndShift ( )

inline

protocols::frag_picker::CS2ndShift::CS2ndShift	(	CSTalosIO &	input_data,
		bool	use_sslimit
	)

References protocols::frag_picker::CB, protocols::frag_picker::CSTalosIO::get_sequence(), protocols::frag_picker::CSTalosIO::get_shift(), protocols::frag_picker::CSTalosIO::has_atom(), protocols::mean_field::max(), protocols::mean_field::min(), read_adjust_table(), read_sslimit_table(), and protocols::frag_picker::tr().

Member Function Documentation

std::string protocols::frag_picker::CS2ndShift::also_check_fix_disulf ( std::string instring )

private

References core::io::raw_data::DisulfideFile::disulfides(), and protocols::hybridization::u.

std::map< char, std::map< std::string, core::Real > > protocols::frag_picker::CS2ndShift::read_adjust_table ( std::string const & file_name )

private

References protocols::cluster::calibur::aa, and protocols::frag_picker::tr().

Referenced by CS2ndShift().

std::map< char, std::map< std::string, std::pair< core::Real, core::Real > > > protocols::frag_picker::CS2ndShift::read_sslimit_table ( std::string const & file_name )

private

References protocols::cluster::calibur::aa, protocols::mean_field::max(), protocols::mean_field::min(), and protocols::frag_picker::tr().

Referenced by CS2ndShift().

utility::vector1< utility::vector1< std::pair< core::Size, core::Real > > > protocols::frag_picker::CS2ndShift::shifts ( )

inline

References secondary_shifts_.

Referenced by protocols::frag_picker::scores::AmbigCSScore::AmbigCSScore(), and protocols::frag_picker::scores::CSScore::CSScore().