| add_batch(std::string const &, core::Size id=0) | protocols::jd2::JobDistributor | virtual |
| add_unfolded_energy_data(std::string tlc, core::scoring::EMapVector const &scores) | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | |
| bad_job_id_ | protocols::jd2::MPIWorkPoolJobDistributor | protected |
| batch(core::Size batch_id) | protocols::jd2::JobDistributor | inlineprotected |
| batch_underflow() | protocols::jd2::JobDistributor | inlineprotectedvirtual |
| begin_critical_section() | protocols::jd2::JobDistributor | protected |
| check_for_parser_in_go_main() | protocols::jd2::JobDistributor | protected |
| clear_current_job_output() | protocols::jd2::JobDistributor | protected |
| current_batch_id() const | protocols::jd2::JobDistributor | inline |
| current_job() const | protocols::jd2::JobDistributor | virtual |
| current_job_finished() | protocols::jd2::JobDistributor | protectedvirtual |
| current_job_id() const | protocols::jd2::JobDistributor | |
| current_job_id_ | protocols::jd2::MPIWorkPoolJobDistributor | protected |
| current_output_name() const | protocols::jd2::JobDistributor | virtual |
| end_critical_section() | protocols::jd2::JobDistributor | protected |
| energy_terms_ | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | private |
| finalize_MPI_ | protocols::jd2::MPIWorkPoolJobDistributor | protected |
| get_current_batch() const | protocols::jd2::JobDistributor | |
| get_instance() | protocols::jd2::JobDistributor | static |
| get_job_time_estimate() const | protocols::jd2::JobDistributor | protected |
| get_jobs() const | protocols::jd2::JobDistributor | protected |
| get_jobs_nonconst() | protocols::jd2::JobDistributor | protected |
| get_new_job_id() override | protocols::jd2::MPIWorkPoolJobDistributor | virtual |
| go(protocols::moves::MoverOP mover) override | protocols::jd2::MPIWorkPoolJobDistributor | virtual |
| protocols::jd2::JobDistributor::go(protocols::moves::MoverOP mover, JobOutputterOP jo) | protocols::jd2::JobDistributor | |
| protocols::jd2::JobDistributor::go(protocols::moves::MoverOP mover, JobInputterOP ji) | protocols::jd2::JobDistributor | |
| protocols::jd2::JobDistributor::go(protocols::moves::MoverOP mover, JobInputterOP ji, JobOutputterOP jo) | protocols::jd2::JobDistributor | |
| go_main(protocols::moves::MoverOP mover) | protocols::jd2::JobDistributor | protected |
| handle_interrupt() override | protocols::jd2::MPIWorkPoolJobDistributor | inlineprotectedvirtual |
| has_been_instantiated() | protocols::jd2::JobDistributor | static |
| increment_failed_jobs() | protocols::jd2::JobDistributor | inlineprotected |
| jd2_signal_handler(int Signal) | protocols::jd2::JobDistributor | protectedstatic |
| job_failed(core::pose::Pose &pose, bool will_retry) override | protocols::jd2::MPIWorkPoolJobDistributor | virtual |
| job_inputter() const | protocols::jd2::JobDistributor | |
| job_inputter_input_source() const | protocols::jd2::JobDistributor | |
| job_outputter() const | protocols::jd2::JobDistributor | |
| job_succeeded(core::pose::Pose &pose, core::Real run_time, std::string const &tag) override | protocols::jd2::MPIWorkPoolJobDistributor | virtual |
| job_succeeded_additional_output(core::pose::Pose &pose, std::string const &tag) | protocols::jd2::JobDistributor | protectedvirtual |
| JobDistributor() | protocols::jd2::JobDistributor | protected |
| JobDistributor(bool empty) | protocols::jd2::JobDistributor | protected |
| load_new_batch() | protocols::jd2::JobDistributor | protectedvirtual |
| mark_current_job_id_for_repetition() override | protocols::jd2::MPIWorkPoolJobDistributor | virtual |
| mark_job_as_bad(core::Size job_id) | protocols::jd2::JobDistributor | protected |
| mark_job_as_completed(core::Size job_id, core::Real run_time) | protocols::jd2::JobDistributor | protected |
| master_add_unfolded_energy_data(std::string tlc, core::scoring::EMapVector const &scores) | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | private |
| master_get_new_job_id() | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| master_go(protocols::moves::MoverOP mover) override | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | protectedvirtual |
| master_job_succeeded(core::pose::Pose &pose, std::string const &tag) | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| master_mark_current_job_id_for_repetition() | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| master_mark_job_as_completed(core::Size const job_index) | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| master_mark_job_as_failed(core::Size const job_index) | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| master_remove_bad_inputs_from_job_list() | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| master_set_energy_terms(core::scoring::EMapVector const &weights) | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | private |
| mpi_finalize(bool finalize) override | protocols::jd2::MPIWorkPoolJobDistributor | virtual |
| MPIWorkPoolJobDistributor() | protocols::jd2::MPIWorkPoolJobDistributor | protected |
| next_batch() | protocols::jd2::JobDistributor | protectedvirtual |
| next_job_to_assign_ | protocols::jd2::MPIWorkPoolJobDistributor | protected |
| note_all_jobs_finished() | protocols::jd2::JobDistributor | protectedvirtual |
| npes_ | protocols::jd2::MPIWorkPoolJobDistributor | protected |
| nr_batches() const | protocols::jd2::JobDistributor | inlineprotected |
| obtain_new_job(bool re_consider_current_job=false) | protocols::jd2::JobDistributor | protected |
| parser() const | protocols::jd2::JobDistributor | protected |
| rank_ | protocols::jd2::MPIWorkPoolJobDistributor | protected |
| remove_bad_inputs_from_job_list() override | protocols::jd2::MPIWorkPoolJobDistributor | virtual |
| remove_system_signal_handler() | protocols::jd2::JobDistributor | protectedstatic |
| repeat_job_ | protocols::jd2::MPIWorkPoolJobDistributor | protected |
| restart() | protocols::jd2::JobDistributor | virtual |
| run_one_job(protocols::moves::MoverOP &mover, time_t allstarttime, std::string &last_inner_job_tag, std::string &last_output_tag, core::Size &last_batch_id, core::Size &retries_this_job, bool first_job) | protocols::jd2::JobDistributor | protected |
| send_go_signal() | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| sequential_distribution() const | protocols::jd2::MPIWorkPoolJobDistributor | inlineprotectedvirtual |
| sequential_distribution_ | protocols::jd2::MPIWorkPoolJobDistributor | protected |
| set_batch_id(core::Size setting) | protocols::jd2::JobDistributor | protected |
| set_current_job_by_index(core::Size curr_job_index) | protocols::jd2::JobDistributor | protected |
| set_energy_terms(core::scoring::EMapVector const &weights) | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | |
| set_job_inputter(JobInputterOP new_job_inputter) | protocols::jd2::JobDistributor | |
| set_job_outputter(const JobOutputterOP &new_job_outputter) | protocols::jd2::JobDistributor | |
| set_sequential_distribution(bool const val) | protocols::jd2::MPIWorkPoolJobDistributor | inlineprotectedvirtual |
| set_starter_for_sequential_distribution(bool const val) | protocols::jd2::MPIWorkPoolJobDistributor | inlineprotectedvirtual |
| setup_pymol_observer(core::pose::Pose &pose) | protocols::jd2::JobDistributor | protected |
| setup_system_signal_handler(void(*prev_fn)(int)=jd2_signal_handler) | protocols::jd2::JobDistributor | protectedstatic |
| slave_add_unfolded_energy_data(std::string tlc, core::scoring::EMapVector const &scores) | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | private |
| slave_get_new_job_id() | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| slave_go(protocols::moves::MoverOP mover) | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| slave_job_succeeded(core::pose::Pose &pose, std::string const &tag) | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| slave_mark_current_job_id_for_repetition() | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| slave_remove_bad_inputs_from_job_list() | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| slave_set_energy_terms(core::scoring::EMapVector const &weights) | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | private |
| starter_for_sequential_distribution() const | protocols::jd2::MPIWorkPoolJobDistributor | inlineprotectedvirtual |
| starter_for_sequential_distribution_ | protocols::jd2::MPIWorkPoolJobDistributor | protected |
| total_nr_jobs() const | protocols::jd2::JobDistributor | inline |
| uem_iter typedef | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | |
| UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor() | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | |
| unweighted_energies_ | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | private |
| unweighted_energies_map_ | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | private |
| using_parser() const | protocols::jd2::JobDistributor | protected |
| wait_for_go_signal() const | protocols::jd2::MPIWorkPoolJobDistributor | protectedvirtual |
| write_citations_and_clear_citation_tracking() const | protocols::jd2::JobDistributor | protected |
| write_output_from_job(core::pose::Pose &pose, protocols::moves::MoverOP mover_copy, protocols::moves::MoverStatus status, core::Size jobtime, core::Size &retries_this_job) | protocols::jd2::JobDistributor | protected |
| ~JobDistributor() | protocols::jd2::JobDistributor | virtual |
| ~MPIWorkPoolJobDistributor() override | protocols::jd2::MPIWorkPoolJobDistributor | |
| ~UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor() override | protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor | |
1.8.7