| cached_score(FragmentCandidateOP, FragmentScoreMapOP) override | protocols::frag_picker::scores::ProfileScore | virtual |
| cached_scores_id_ | protocols::frag_picker::scores::ProfileScore | private |
| CachingScoringMethod(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::CachingScoringMethod | inline |
| clean_up() override | protocols::frag_picker::scores::ProfileScore | inlinevirtual |
| clear() | protocols::frag_picker::scores::ProfileScore | private |
| describe_score(FragmentCandidateOP f, FragmentScoreMapOP empty_map, std::ostream &out) | protocols::frag_picker::scores::ProfileScore | |
| do_caching(VallChunkOP) override | protocols::frag_picker::scores::ProfileScore | virtual |
| FragmentScoringMethod(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_id() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_min_allowed_score() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_priority() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_score_name() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_use_lowest() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| id_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| lowest_acceptable_value_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| name_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| priority_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| profile_scoring_ | protocols::frag_picker::scores::ProfileScore | private |
| ProfileScore(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, core::sequence::SequenceProfileOP query_profile, core::sequence::ScoringSchemeOP profile_scoring, core::Size longest_vall_chunk) | protocols::frag_picker::scores::ProfileScore | inline |
| query_profile_ | protocols::frag_picker::scores::ProfileScore | private |
| score(FragmentCandidateOP, FragmentScoreMapOP) override | protocols::frag_picker::scores::CachingScoringMethod | inlinevirtual |
| scores_ | protocols::frag_picker::scores::ProfileScore | protected |
| set_id(core::Size id) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| set_min_allowed_score(core::Real lowest_acceptable_value) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| use_lowest_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| ~ProfileScore() override | protocols::frag_picker::scores::ProfileScore | |