init.cc File Reference

options system initialization routines More...

#include <ctime>
#include <core/init/init.hh>
#include <core/types.hh>
#include <core/id/bogus.hh>
#include <basic/options/option.hh>
#include <utility/sys_util.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/io/izstream.hh>
#include <basic/Tracer.hh>
#include <basic/prof.hh>
#include <core/chemical/rdkit/util.hh>
#include <basic/random/RandomGeneratorSettings.hh>
#include <basic/random/init_random_generator.hh>
#include <core/init/score_function_corrections.hh>
#include <core/energy_methods/AACompositionEnergyCreator.hh>
#include <core/energy_methods/AARepeatEnergyCreator.hh>
#include <core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/ApproximateBuriedUnsatPenaltyCreator.hh>
#include <core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenaltyCreator.hh>
#include <core/scoring/constraints/ConstraintsEnergyCreator.hh>
#include <core/energy_methods/CentroidDisulfideEnergyCreator.hh>
#include <core/energy_methods/DisulfideMatchingEnergyCreator.hh>
#include <core/energy_methods/FullatomDisulfideEnergyCreator.hh>
#include <core/scoring/etable/EtableEnergyCreator.hh>
#include <core/pack/guidance_scoreterms/hbnet_energy/HBNetEnergyCreator.hh>
#include <core/scoring/hbonds/HBondEnergyCreator.hh>
#include <core/energy_methods/NPDHBondEnergyCreator.hh>
#include <core/scoring/methods/EnergyMethodRegistrator.hh>
#include <core/energy_methods/ArgCationPiEnergyCreator.hh>
#include <core/energy_methods/AspartimidePenaltyEnergyCreator.hh>
#include <core/energy_methods/CenPairEnergyCreator.hh>
#include <core/energy_methods/ChainbreakEnergyCreator.hh>
#include <core/energy_methods/BranchEnergyCreator.hh>
#include <core/energy_methods/ContactOrderEnergyCreator.hh>
#include <core/energy_methods/EnvEnergyCreator.hh>
#include <core/energy_methods/EnvSmoothEnergyCreator.hh>
#include <core/energy_methods/IntermolEnergyCreator.hh>
#include <core/energy_methods/MissingEnergyCreator.hh>
#include <core/scoring/nmer/NMerRefEnergyCreator.hh>
#include <core/scoring/nmer/NMerPSSMEnergyCreator.hh>
#include <core/scoring/nmer/NMerSVMEnergyCreator.hh>
#include <core/energy_methods/OmegaTetherEnergyCreator.hh>
#include <core/energy_methods/OtherPoseEnergyCreator.hh>
#include <core/energy_methods/P_AA_EnergyCreator.hh>
#include <core/energy_methods/P_AA_ss_EnergyCreator.hh>
#include <core/energy_methods/P_AA_pp_EnergyCreator.hh>
#include <core/energy_methods/AbegoEnergyCreator.hh>
#include <core/energy_methods/PackStatEnergyCreator.hh>
#include <core/energy_methods/PairEnergyCreator.hh>
#include <core/energy_methods/PeptideBondEnergyCreator.hh>
#include <core/energy_methods/ProClosureEnergyCreator.hh>
#include <core/energy_methods/BurialEnergyCreator.hh>
#include <core/energy_methods/Burial_v2EnergyCreator.hh>
#include <core/energy_methods/HRF_MSLabelingEnergyCreator.hh>
#include <core/energy_methods/HRFDynamicsEnergyCreator.hh>
#include <core/energy_methods/CovalentLabelingEnergyCreator.hh>
#include <core/energy_methods/CovalentLabelingFAEnergyCreator.hh>
#include <core/energy_methods/RG_Energy_FastCreator.hh>
#include <core/energy_methods/RG_LocalEnergyCreator.hh>
#include <core/energy_methods/RNA_CoarseDistEnergy.hh>
#include <core/energy_methods/SA_EnergyCreator.hh>
#include <core/energy_methods/SSElementMotifContactEnergyCreator.hh>
#include <core/energy_methods/D2H_SA_EnergyCreator.hh>
#include <core/energy_methods/ProQ_EnergyCreator.hh>
#include <core/energy_methods/RMS_EnergyCreator.hh>
#include <core/energy_methods/RamaPreProEnergyCreator.hh>
#include <core/energy_methods/RamachandranEnergy2BCreator.hh>
#include <core/energy_methods/RamachandranEnergyCreator.hh>
#include <core/energy_methods/ReferenceEnergyCreator.hh>
#include <core/energy_methods/ReferenceEnergyNoncanonicalCreator.hh>
#include <core/energy_methods/SecondaryStructureEnergyCreator.hh>
#include <core/energy_methods/SugarBackboneEnergyCreator.hh>
#include <core/energy_methods/DFIRE_EnergyCreator.hh>
#include <core/pack/guidance_scoreterms/sap/SapConstraintEnergyCreator.hh>
#include <core/scoring/vdwaals/VDW_EnergyCreator.hh>
#include <core/energy_methods/GoapEnergyCreator.hh>
#include <core/energy_methods/RingClosureEnergyCreator.hh>
#include <core/energy_methods/AromaticBackboneRestraintEnergyCreator.hh>
#include <core/energy_methods/MHCEpitopeEnergyCreator.hh>
#include <core/energy_methods/DumpTrajectoryEnergyCreator.hh>
#include <core/energy_methods/NetChargeEnergyCreator.hh>
#include <core/pack/dunbrack/DunbrackEnergyCreator.hh>
#include <core/pack/dunbrack/cenrot/CenRotDunEnergyCreator.hh>
#include <core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergyCreator.hh>
#include <core/scoring/carbon_hbonds/CarbonHBondEnergyCreator.hh>
#include <core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergyCreator.hh>
#include <core/energy_methods/CustomAtomPairEnergyCreator.hh>
#include <core/energy_methods/FastDensEnergyCreator.hh>
#include <core/energy_methods/ElecDensCenEnergyCreator.hh>
#include <core/energy_methods/ElecDensAllAtomCenEnergyCreator.hh>
#include <core/energy_methods/ElecDensEnergyCreator.hh>
#include <core/energy_methods/XtalMLEnergyCreator.hh>
#include <core/energy_methods/ElecDensAtomwiseEnergyCreator.hh>
#include <core/energy_methods/ExactOccludedHbondSolEnergyCreator.hh>
#include <core/energy_methods/ContextDependentGeometricSolEnergyCreator.hh>
#include <core/energy_methods/ContextIndependentGeometricSolEnergyCreator.hh>
#include <core/energy_methods/OccludedHbondSolEnergyCreator.hh>
#include <core/energy_methods/OccludedHbondSolEnergy_onebodyCreator.hh>
#include <core/energy_methods/DEEREnergyCreator.hh>
#include <core/scoring/elec/FA_ElecEnergyCreator.hh>
#include <core/energy_methods/FA_GrpElecEnergyCreator.hh>
#include <core/energy_methods/FA_ElecEnergyAroAroCreator.hh>
#include <core/energy_methods/FA_ElecEnergyAroAllCreator.hh>
#include <core/energy_methods/RNA_FA_ElecEnergyCreator.hh>
#include <core/energy_methods/HackAroEnergyCreator.hh>
#include <core/energy_methods/DNAChiEnergyCreator.hh>
#include <core/energy_methods/DNATorsionEnergyCreator.hh>
#include <core/energy_methods/DNA_BaseEnergyCreator.hh>
#include <core/energy_methods/DNA_DihedralEnergyCreator.hh>
#include <core/energy_methods/DirectReadoutEnergyCreator.hh>
#include <core/energy_methods/DistanceChainbreakEnergyCreator.hh>
#include <core/energy_methods/Fa_MbenvEnergyCreator.hh>
#include <core/energy_methods/Fa_MbsolvEnergyCreator.hh>
#include <core/energy_methods/FreeDOF_EnergyCreator.hh>
#include <core/energy_methods/HybridVDW_EnergyCreator.hh>
#include <core/energy_methods/GenBornEnergyCreator.hh>
#include <core/energy_methods/GenericBondedEnergyCreator.hh>
#include <core/energy_methods/VdWTinkerEnergyCreator.hh>
#include <core/energy_methods/MultipoleElecEnergyCreator.hh>
#include <core/energy_methods/SASAEnergyCreator.hh>
#include <core/energy_methods/FACTSEnergyCreator.hh>
#include <core/energy_methods/LK_PolarNonPolarEnergyCreator.hh>
#include <core/energy_methods/LK_hackCreator.hh>
#include <core/scoring/lkball/LK_BallEnergyCreator.hh>
#include <core/energy_methods/LinearChainbreakEnergyCreator.hh>
#include <core/energy_methods/LinearBranchEnergyCreator.hh>
#include <core/scoring/methods/MMBondAngleEnergyCreator.hh>
#include <core/scoring/methods/MMBondLengthEnergyCreator.hh>
#include <core/energy_methods/CartesianBondedEnergyCreator.hh>
#include <core/scoring/methods/MMTorsionEnergyCreator.hh>
#include <core/scoring/methods/MMLJEnergyIntraCreator.hh>
#include <core/scoring/methods/MMLJEnergyInterCreator.hh>
#include <core/energy_methods/MembraneCbetaEnergyCreator.hh>
#include <core/energy_methods/MembraneCenPairEnergyCreator.hh>
#include <core/energy_methods/MembraneEnvEnergyCreator.hh>
#include <core/energy_methods/MembraneEnvPenaltiesCreator.hh>
#include <core/energy_methods/MembraneLipoCreator.hh>
#include <core/energy_methods/MembraneEnvSmoothEnergyCreator.hh>
#include <core/energy_methods/MPPairEnergyCreator.hh>
#include <core/energy_methods/MPEnvEnergyCreator.hh>
#include <core/energy_methods/MPCBetaEnergyCreator.hh>
#include <core/scoring/membrane/MPNonHelixPenaltyCreator.hh>
#include <core/scoring/membrane/MPTerminiPenaltyCreator.hh>
#include <core/scoring/membrane/MPTMProjPenaltyCreator.hh>
#include <core/energy_methods/FaMPEnvEnergyCreator.hh>
#include <core/energy_methods/FaMPSolvEnergyCreator.hh>
#include <core/energy_methods/FaMPEnvSmoothEnergyCreator.hh>
#include <core/energy_methods/MPResidueLipophilicityEnergyCreator.hh>
#include <core/energy_methods/MPHelicalityEnergyCreator.hh>
#include <core/energy_methods/MPSpanInsertionEnergyCreator.hh>
#include <core/energy_methods/MPSpanAngleEnergyCreator.hh>
#include <core/energy_methods/pHEnergyCreator.hh>
#include <core/energy_methods/PoissonBoltzmannEnergyCreator.hh>
#include <core/energy_methods/ChemicalShiftAnisotropyEnergyCreator.hh>
#include <core/energy_methods/DipolarCouplingEnergyCreator.hh>
#include <core/energy_methods/ResidualDipolarCouplingEnergyCreator.hh>
#include <core/energy_methods/ResidualDipolarCouplingEnergy_RohlCreator.hh>
#include <core/energy_methods/SmoothCenPairEnergyCreator.hh>
#include <core/energy_methods/SmoothEnvEnergyCreator.hh>
#include <core/energy_methods/CenPairMotifEnergyCreator.hh>
#include <core/energy_methods/CenPairMotifDegreeEnergyCreator.hh>
#include <core/energy_methods/CenRotPairEnergyCreator.hh>
#include <core/energy_methods/CenRotEnvEnergyCreator.hh>
#include <core/energy_methods/CenHBEnergyCreator.hh>
#include <core/energy_methods/MotifDockEnergyCreator.hh>
#include <core/energy_methods/SuckerEnergyCreator.hh>
#include <core/energy_methods/GaussianOverlapEnergyCreator.hh>
#include <core/energy_methods/YHHPlanarityEnergyCreator.hh>
#include <core/energy_methods/HydroxylTorsionEnergyCreator.hh>
#include <core/pack/interaction_graph/SurfaceEnergyCreator.hh>
#include <core/pack/interaction_graph/HPatchEnergyCreator.hh>
#include <core/energy_methods/MgEnergyCreator.hh>
#include <core/energy_methods/RNA_MgPointEnergyCreator.hh>
#include <core/energy_methods/SymmetricLigandEnergyCreator.hh>
#include <core/energy_methods/UnfoldedStateEnergyCreator.hh>
#include <core/energy_methods/SplitUnfoldedTwoBodyEnergyCreator.hh>
#include <core/energy_methods/WaterAdductHBondEnergyCreator.hh>
#include <core/energy_methods/WaterAdductIntraEnergyCreator.hh>
#include <core/energy_methods/WaterSpecificEnergyCreator.hh>
#include <core/scoring/nv/NVscoreCreator.hh>
#include <core/scoring/orbitals/OrbitalsScoreCreator.hh>
#include <core/scoring/interface_/DDPscoreCreator.hh>
#include <core/energy_methods/HolesEnergyCreator.hh>
#include <core/energy_methods/SurfVolEnergyCreator.hh>
#include <core/energy_methods/SurfEnergyCreator.hh>
#include <core/energy_methods/RG_Energy_RNACreator.hh>
#include <core/energy_methods/RNA_BulgeEnergyCreator.hh>
#include <core/energy_methods/RNA_FullAtomStackingEnergyCreator.hh>
#include <core/energy_methods/RNA_JR_SuiteEnergyCreator.hh>
#include <core/energy_methods/RNA_LJ_BaseEnergyCreator.hh>
#include <core/energy_methods/RNA_PairwiseLowResolutionEnergyCreator.hh>
#include <core/energy_methods/RNA_PartitionEnergyCreator.hh>
#include <core/energy_methods/RNP_LowResEnergyCreator.hh>
#include <core/energy_methods/RNP_LowResPairDistEnergyCreator.hh>
#include <core/energy_methods/RNP_LowResStackEnergyCreator.hh>
#include <core/energy_methods/RNA_SugarCloseEnergyCreator.hh>
#include <core/energy_methods/RNA_StubCoordinateEnergyCreator.hh>
#include <core/energy_methods/RNA_SuiteEnergyCreator.hh>
#include <core/energy_methods/TNA_SuiteEnergyCreator.hh>
#include <core/energy_methods/RNA_TorsionEnergyCreator.hh>
#include <core/energy_methods/RNA_VDW_EnergyCreator.hh>
#include <core/energy_methods/RNA_FullAtomVDW_BasePhosphateCreator.hh>
#include <core/energy_methods/StackElecEnergyCreator.hh>
#include <core/energy_methods/RNA_ChemicalShiftEnergyCreator.hh>
#include <core/energy_methods/RNA_ChemicalMappingEnergyCreator.hh>
#include <core/energy_methods/RNA_DataBackboneEnergyCreator.hh>
#include <core/energy_methods/LoopCloseEnergyCreator.hh>
#include <core/scoring/sym_e/symECreator.hh>
#include <core/energy_methods/FastSAXSEnergyCreator.hh>
#include <core/energy_methods/SAXSEnergyCreator.hh>
#include <core/energy_methods/SAXSEnergyCreatorFA.hh>
#include <core/energy_methods/SAXSEnergyCreatorCEN.hh>
#include <core/energy_methods/FiberDiffractionEnergyCreator.hh>
#include <core/energy_methods/FiberDiffractionEnergyDensCreator.hh>
#include <core/energy_methods/PointWaterEnergyCreator.hh>
#include <core/chemical/rotamers/RotamerLibrarySpecificationRegistrator.hh>
#include <core/chemical/rotamers/BasicRotamerLibrarySpecificationCreator.hh>
#include <core/chemical/rotamers/CenrotRotamerLibrarySpecificationCreator.hh>
#include <core/chemical/rotamers/DunbrackRotamerLibrarySpecificationCreator.hh>
#include <core/chemical/rotamers/NCAARotamerLibrarySpecificationCreator.hh>
#include <core/chemical/rotamers/PDBRotamerLibrarySpecificationCreator.hh>
#include <core/pack/dunbrack/SingleResidueDunbrackLibraryCreator.hh>
#include <core/pack/dunbrack/cenrot/SingleResidueCenrotLibraryCreator.hh>
#include <core/pack/rotamers/SingleResidueRotamerLibraryRegistrator.hh>
#include <core/pack/rotamers/SingleBasicRotamerLibraryCreator.hh>
#include <core/pack/rotamers/SingleLigandRotamerLibraryCreator.hh>
#include <core/pack/rotamers/SingleNCAARotamerLibraryCreator.hh>
#include <core/pack/rotamers/StoredRotamerLibraryCreator.hh>
#include <core/scoring/constraints/ConstraintFactory.hh>
#include <core/scoring/constraints/BasicConstraintCreators.hh>
#include <core/pack/dunbrack/DunbrackConstraintCreator.hh>
#include <core/scoring/constraints/SequenceProfileConstraintCreator.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/io/silent/BasicSilentStructCreators.hh>
#include <core/import_pose/PDBSilentStructCreator.hh>
#include <core/sequence/SequenceFactory.hh>
#include <core/sequence/BasicSequenceCreators.hh>
#include <core/pack/task/operation/TaskOperationRegistrator.hh>
#include <core/pack/task/operation/TaskOperationCreators.hh>
#include <core/pack/task/operation/DesignRestrictionsCreator.hh>
#include <core/pack/task/operation/ClashBasedRepackShellCreator.hh>
#include <core/pack/task/operation/EnableMultiCoolAnnealerCreator.hh>
#include <core/pack/task/operation/EnableSmartAnnealerCreator.hh>
#include <core/pack/task/operation/KeepSequenceSymmetryCreator.hh>
#include <core/pack/task/operation/OperateOnCertainResiduesCreator.hh>
#include <core/pack/task/operation/OperateOnResidueSubsetCreator.hh>
#include <core/pack/task/operation/NoRepackDisulfidesCreator.hh>
#include <core/pack/task/operation/OptCysHGCreator.hh>
#include <core/pack/task/operation/OptHCreator.hh>
#include <core/pack/task/operation/ResLvlTaskOperationRegistrator.hh>
#include <core/pack/task/operation/ResLvlTaskOperationCreators.hh>
#include <core/pack/task/operation/ResFilterRegistrator.hh>
#include <core/pack/task/operation/ResFilterCreators.hh>
#include <core/pack/task/operation/RestrictInteractionGraphThreadsOperationCreator.hh>
#include <core/select/residue_selector/AsymmetricUnitSelectorCreator.hh>
#include <core/select/residue_selector/GlycanLayerSelectorCreator.hh>
#include <core/select/residue_selector/ResidueSelectorCreators.hh>
#include <core/select/residue_selector/ResiduePropertySelectorCreator.hh>
#include <core/select/residue_selector/PrimarySequenceNeighborhoodSelectorCreator.hh>
#include <core/select/residue_selector/SymmetricalResidueSelectorCreator.hh>
#include <core/pack/task/residue_selector/ClashBasedShellSelectorCreator.hh>
#include <core/select/residue_selector/CloseContactResidueSelectorCreator.hh>
#include <core/select/residue_selector/LogicResidueSelectorCreator.hh>
#include <core/select/residue_selector/ResidueSelectorRegistrator.hh>
#include <core/pack/palette/PackerPaletteRegistrator.hh>
#include <core/pack/palette/CustomBaseTypePackerPaletteCreator.hh>
#include <core/pack/palette/DefaultPackerPaletteCreator.hh>
#include <core/pack/palette/NoDesignPackerPaletteCreator.hh>
#include <core/pack/palette/PackerPaletteCreator.hh>
#include <core/select/jump_selector/JumpSelectorRegistrator.hh>
#include <core/select/jump_selector/AndJumpSelectorCreator.hh>
#include <core/select/jump_selector/OrJumpSelectorCreator.hh>
#include <core/select/jump_selector/NotJumpSelectorCreator.hh>
#include <core/select/jump_selector/JumpIndexSelectorCreator.hh>
#include <core/select/jump_selector/InterchainJumpSelectorCreator.hh>
#include <platform/types.hh>
#include <sys/resource.h>
#include <fstream>
#include <sstream>
#include <string>
#include <cstring>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/testing.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/resource_manager/ResourceLoaderRegistrator.hh>
#include <core/conformation/symmetry/SymmDataLoaderCreator.hh>
#include <core/import_pose/PoseResourceLoaderCreator.hh>
#include <core/init/init.ResourceLocatorCreators.ihh>
#include <core/init/init.ResourceLocatorRegistrators.ihh>
#include <basic/options/keys/LoopModel.OptionKeys.gen.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <core/pack/task/operation/ResFilterFactory.hh>
#include <core/pack/task/operation/ResLvlTaskOperationFactory.hh>
#include <core/pack/task/operation/TaskOperationFactory.hh>
#include <core/scoring/ScoringManager.hh>
#include <basic/init.hh>
#include <utility/version.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/CSI_Sequence.hh>
#include <utility/crash_report.hh>
#include <utility/options/OptionCollection.hh>
#include <utility/options/keys/OptionKeyList.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::init

Macros
#define	PROCESS_STACK_SIZE   (32 * 1024 * 1024)

Typedefs
using	ostringstream_t = std::ostringstream

Functions
static basic::Tracer	core::init::TR ("core.init")
void	core::init::init_mpi (int, char **)
void	core::init::init_options (int argc, char *argv[])
	Initialize the option system, which manages command line options. More...
void	core::init::init_crash_reporter (int argc, char *argv[])
	Setup crash reporter. More...
void	core::init::init_complex_options ()
	After the tracers have been initialized, now go back and modify some of the values in the options system based on (hard coded) inter-flag relationships. Some of these relationships are set in the basic::options::process() function, some of them are handled in this .cc file. More...
void	core::init::init_tracers ()
	Tracers control output to std::cout and std::cerr. More...
void	core::init::init_source_revision ()
	Choose to output source version control information? More...
void	core::init::init_paths ()
	Setup basic search paths. More...
void	core::init::check_deprecated_flags ()
	Check for deprecated flags specified by the user and output error messages if necessary. More...
void	core::init::report_application_command (int argc, char *argv[])
	Describe the application execution command. More...
void	core::init::random_delay ()
	Choose to randomly delay execution to desyncronize parallel execution. More...
void	core::init::locate_rosetta_database ()
	Locate rosetta_database. More...
void	core::init::check_load_fconfig ()
	Check if common config file exists and load it/them as flags files. More...
void	core::init::init_profiling ()
	Profiling measures execution performance. More...
void	core::init::init_resources ()
	Set up system resources. More...
void	core::init::init (int argc, char *argv[])
	Init basic core systems: options system, random system. More...
void	core::init::init (utility::vector1< std::string > const &args)
	wrapper for core system Init More...

Variables
static EnergyMethodRegistrator < energy_methods::AARepeatEnergyCreator >	core::init::AARepeatEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::AACompositionEnergyCreator >	core::init::AACompositionEnergyCreator_registrator
static EnergyMethodRegistrator < pack::guidance_scoreterms::approximate_buried_unsat_penalty::ApproximateBuriedUnsatPenaltyCreator >	core::init::ApproximateBuriedUnsatPenaltyCreator_registrator
static EnergyMethodRegistrator < scoring::constraints::ConstraintsEnergyCreator >	core::init::ConstraintsEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::CentroidDisulfideEnergyCreator >	core::init::CentroidDisulfideEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::DisulfideMatchingEnergyCreator >	core::init::DisulfideMatchingEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::FullatomDisulfideEnergyCreator >	core::init::FullatomDisulfideEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::etable::EtableEnergyCreator >	core::init::EtableEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::etable::EtableClassicIntraEnergyCreator >	core::init::EtableClassicIntraEnergyCreator_registrator
static EnergyMethodRegistrator < pack::guidance_scoreterms::hbnet_energy::HBNetEnergyCreator >	core::init::HBNetEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::hbonds::HBondEnergyCreator >	core::init::HBondEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MHCEpitopeEnergyCreator >	core::init::MHCEpitopeEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::NPDHBondEnergyCreator >	core::init::NPDHBondEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ArgCationPiEnergyCreator >	core::init::ArgCationPiEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::AspartimidePenaltyEnergyCreator >	core::init::AspartimidePenaltyEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ChainbreakEnergyCreator >	core::init::ChainbreakEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::BranchEnergyCreator >	core::init::BranchEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::CenPairEnergyCreator >	core::init::CenPairEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::CenPairMotifEnergyCreator >	core::init::CenPairMotifEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::CenPairMotifDegreeEnergyCreator >	core::init::CenPairMotifDegreeEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ContactOrderEnergyCreator >	core::init::ContactOrderEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::IntermolEnergyCreator >	core::init::IntermolEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MissingEnergyCreator >	core::init::MissingEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::EnvEnergyCreator >	core::init::EnvEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::EnvSmoothEnergyCreator >	core::init::EnvSmoothEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::OmegaTetherEnergyCreator >	core::init::OmegaTetherEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::OtherPoseEnergyCreator >	core::init::OtherPoseEnergyCreator_registrator
static EnergyMethodRegistrator < core::scoring::methods::NMerRefEnergyCreator >	core::init::NMerRefEnergyCreator_registrator
static EnergyMethodRegistrator < core::scoring::methods::NMerPSSMEnergyCreator >	core::init::NMerPSSMEnergyCreator_registrator
static EnergyMethodRegistrator < core::scoring::methods::NMerSVMEnergyCreator >	core::init::NMerSVMEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::P_AA_EnergyCreator >	core::init::P_AA_EnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::P_AA_ss_EnergyCreator >	core::init::P_AA_ss_EnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::P_AA_pp_EnergyCreator >	core::init::P_AA_pp_EnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::AbegoEnergyCreator >	core::init::AbegoEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::PackStatEnergyCreator >	core::init::PackStatEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::PairEnergyCreator >	core::init::PairEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::PeptideBondEnergyCreator >	core::init::PeptideBondEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ProClosureEnergyCreator >	core::init::ProClosureEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::BurialEnergyCreator >	core::init::BurialCreator_registrator
static EnergyMethodRegistrator < energy_methods::Burial_v2EnergyCreator >	core::init::Burial_v2Creator_registrator
static EnergyMethodRegistrator < energy_methods::CovalentLabelingEnergyCreator >	core::init::CovalentLabelingEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::CovalentLabelingFAEnergyCreator >	core::init::CovalentLabelingFAEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::HRFDynamicsEnergyCreator >	core::init::HRFDynamicsEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::HRF_MSLabelingEnergyCreator >	core::init::HRF_MSLabelingEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RG_Energy_FastCreator >	core::init::RG_Energy_FastCreator_registrator
static EnergyMethodRegistrator < energy_methods::RG_LocalEnergyCreator >	core::init::RG_LocalEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SA_EnergyCreator >	core::init::SA_EnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SSElementMotifContactEnergyCreator >	core::init::SSElementMotifContactEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::D2H_SA_EnergyCreator >	core::init::D2H_SA_EnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ProQ_EnergyCreator >	core::init::ProQ_EnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RMS_EnergyCreator >	core::init::RMS_EnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RamaPreProEnergyCreator >	core::init::RamaPreProEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RamachandranEnergy2BCreator >	core::init::RamachandranEnergy2BCreator_registrator
static EnergyMethodRegistrator < energy_methods::RamachandranEnergyCreator >	core::init::RamachandranEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ReferenceEnergyCreator >	core::init::ReferenceEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ReferenceEnergyNoncanonicalCreator >	core::init::ReferenceEnergyNoncanonicalCreator_registrator
static EnergyMethodRegistrator < energy_methods::SecondaryStructureEnergyCreator >	core::init::SecondaryStructureEnergyCreator_registrator
static EnergyMethodRegistrator < pack::guidance_scoreterms::sap::SapConstraintEnergyCreator >	core::init::SapConstraintEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::dfire::DFIRE_EnergyCreator >	core::init::DFIRE_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::vdwaals::VDW_EnergyCreator >	core::init::VDW_EnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::GoapEnergyCreator >	core::init::GoapEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RingClosureEnergyCreator >	core::init::RingClosureEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::AromaticBackboneRestraintEnergyCreator >	core::init::AromaticBackboneRestraintEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SugarBackboneEnergyCreator >	core::init::SugarBackboneEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::DumpTrajectoryEnergyCreator >	core::init::DumpTrajectoryEnergy_registrator
static EnergyMethodRegistrator < energy_methods::NetChargeEnergyCreator >	core::init::NetChargeEnergyCreator_registrator
static EnergyMethodRegistrator < pack::guidance_scoreterms::buried_unsat_penalty::BuriedUnsatPenaltyCreator >	core::init::BuriedUnsatPenaltyCreator_registrator
static EnergyMethodRegistrator < pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergyCreator >	core::init::VoidsPenaltyEnergyCreator_registrator
static EnergyMethodRegistrator < pack::dunbrack::DunbrackEnergyCreator >	core::init::DunbrackEnergyCreator_registrator
static EnergyMethodRegistrator < pack::dunbrack::cenrot::CenRotDunEnergyCreator >	core::init::CenRotDunEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::nv::NVscoreCreator >	core::init::NVscoreCreator_registrator
static EnergyMethodRegistrator < scoring::orbitals::OrbitalsScoreCreator >	core::init::OrbitalsScoreCreator_registrator
static EnergyMethodRegistrator < scoring::interface_::DDPscoreCreator >	core::init::DDPscoreCreator_registrator
static EnergyMethodRegistrator < scoring::carbon_hbonds::CarbonHBondEnergyCreator >	core::init::CarbonHBondEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::custom_pair_distance::FullatomCustomPairDistanceEnergyCreator >	core::init::FullatomCustomPairDistanceEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::CustomAtomPairEnergyCreator >	core::init::CustomAtomPairEnergy_registrator
static EnergyMethodRegistrator < energy_methods::FastDensEnergyCreator >	core::init::FastDensEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ElecDensCenEnergyCreator >	core::init::ElecDensCenEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ElecDensAllAtomCenEnergyCreator >	core::init::ElecDensAllAtomCenEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ElecDensEnergyCreator >	core::init::ElecDensEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::XtalMLEnergyCreator >	core::init::XtalMLEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ElecDensAtomwiseEnergyCreator >	core::init::ElecDensAtomwiseEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ExactOccludedHbondSolEnergyCreator >	core::init::ExactOccludedHbondSolEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ContextDependentGeometricSolEnergyCreator >	core::init::ContextDependentGeometricSolEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ContextIndependentGeometricSolEnergyCreator >	core::init::ContextIndependentGeometricSolEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::OccludedHbondSolEnergyCreator >	core::init::OccludedHbondSolEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::OccludedHbondSolEnergy_onebodyCreator >	core::init::OccludedHbondSolEnergy_onebodyCreator_registrator
static EnergyMethodRegistrator < scoring::elec::FA_ElecEnergyCreator >	core::init::FA_ElecEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_FA_ElecEnergyCreator >	core::init::RNA_FA_ElecEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::FA_ElecEnergyAroAroCreator >	core::init::FA_ElecEnergyAroAroCreator_registrator
static EnergyMethodRegistrator < energy_methods::FA_ElecEnergyAroAllCreator >	core::init::FA_ElecEnergyAroAllCreator_registrator
static EnergyMethodRegistrator < energy_methods::FA_GrpElecEnergyCreator >	core::init::FA_GrpElecEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::HackAroEnergyCreator >	core::init::HackAroEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::DEEREnergyCreator >	core::init::DEEREnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::DNAChiEnergyCreator >	core::init::DNAChiEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::DNATorsionEnergyCreator >	core::init::DNATorsionEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::LoopCloseEnergyCreator >	core::init::LoopCloseEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MgEnergyCreator >	core::init::MgEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_MgPointEnergyCreator >	core::init::RNA_MgPointEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::DNA_BaseEnergyCreator >	core::init::DNA_BaseEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::DNA_DihedralEnergyCreator >	core::init::DNA_DihedralEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::DirectReadoutEnergyCreator >	core::init::DirectReadoutEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::DistanceChainbreakEnergyCreator >	core::init::DistanceChainbreakEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::Fa_MbenvEnergyCreator >	core::init::Fa_MbenvEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::Fa_MbsolvEnergyCreator >	core::init::Fa_MbsolvEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::FreeDOF_EnergyCreator >	core::init::FreeDOF_EnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::GenBornEnergyCreator >	core::init::GenBornEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::GenericBondedEnergyCreator >	core::init::GenericBondedEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::VdWTinkerEnergyCreator >	core::init::VdWTinkerEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MultipoleElecEnergyCreator >	core::init::MultipoleElecEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SASAEnergyCreator >	core::init::SASAEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::FACTSEnergyCreator >	core::init::FACTSEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::HybridVDW_EnergyCreator >	core::init::HybridVDW_EnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::LK_PolarNonPolarEnergyCreator >	core::init::LK_PolarNonPolarEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::LK_hackCreator >	core::init::LK_hackCreator_registrator
static EnergyMethodRegistrator < scoring::lkball::LK_BallEnergyCreator >	core::init::LK_BallEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::LinearChainbreakEnergyCreator >	core::init::LinearChainbreakEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::LinearBranchEnergyCreator >	core::init::LinearBranchEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MMBondAngleEnergyCreator >	core::init::MMBondAngleEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::CartesianBondedEnergyCreator >	core::init::CartesianBondedEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MMBondLengthEnergyCreator >	core::init::MMBondLengthEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MMTorsionEnergyCreator >	core::init::MMTorsionEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MMLJEnergyInterCreator >	core::init::MMLJEnergyInterCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MMLJEnergyIntraCreator >	core::init::MMLJEnergyIntraCreator_registrator
static EnergyMethodRegistrator < energy_methods::MembraneCbetaEnergyCreator >	core::init::MembraneCbetaEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MembraneCenPairEnergyCreator >	core::init::MembraneCenPairEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MembraneEnvEnergyCreator >	core::init::MembraneEnvEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MembraneEnvPenaltiesCreator >	core::init::MembraneEnvPenaltiesCreator_registrator
static EnergyMethodRegistrator < energy_methods::MPPairEnergyCreator >	core::init::MPPairEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MPEnvEnergyCreator >	core::init::MPEnvEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MPCbetaEnergyCreator >	core::init::MPCbetaEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::membrane::MPNonHelixPenaltyCreator >	core::init::MPNonHelixPenaltyCreator_registrator
static EnergyMethodRegistrator < scoring::membrane::MPTerminiPenaltyCreator >	core::init::MPTerminiPenaltyCreator_registrator
static EnergyMethodRegistrator < scoring::membrane::MPTMProjPenaltyCreator >	core::init::MPTMProjPenaltyCreator_registrator
static EnergyMethodRegistrator < energy_methods::FaMPEnvEnergyCreator >	core::init::FaMPEnvEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::FaMPSolvEnergyCreator >	core::init::FaMPSolvEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::FaMPEnvSmoothEnergyCreator >	core::init::FaMPEnvSMoothEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MPResidueLipophilicityEnergyCreator >	core::init::MPResidueLipophilicityEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MPHelicalityEnergyCreator >	core::init::MPHelicalityEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MPSpanInsertionEnergyCreator >	core::init::MPSpanInsertionEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MPSpanAngleEnergyCreator >	core::init::MPSpanAngleEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SmoothCenPairEnergyCreator >	core::init::SmoothCenPairEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SmoothEnvEnergyCreator >	core::init::SmoothEnvEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::CenRotPairEnergyCreator >	core::init::CenRotPairEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::CenRotEnvEnergyCreator >	core::init::CenRotEnvEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::CenHBEnergyCreator >	core::init::CenHBEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::MembraneLipoCreator >	core::init::MembraneLipoCreator_registrator
static EnergyMethodRegistrator < energy_methods::MembraneEnvSmoothEnergyCreator >	core::init::MembraneEnvSmoothEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::pHEnergyCreator >	core::init::pHEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ChemicalShiftAnisotropyEnergyCreator >	core::init::ChemicalShiftAnisotropyEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::DipolarCouplingEnergyCreator >	core::init::DipolarCouplingEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ResidualDipolarCouplingEnergyCreator >	core::init::ResidualDipolarCouplingEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::ResidualDipolarCouplingEnergy_RohlCreator >	core::init::ResidualDipolarCouplingEnergy_RohlCreator_registrator
static EnergyMethodRegistrator < energy_methods::MotifDockEnergyCreator >	core::init::MotifDockEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SuckerEnergyCreator >	core::init::SuckerEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::GaussianOverlapEnergyCreator >	core::init::GaussianOverlapEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::YHHPlanarityEnergyCreator >	core::init::YYHPlanarityEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::HydroxylTorsionEnergyCreator >	core::init::HydroxylTorsionEnergyCreator_registrator
static EnergyMethodRegistrator < pack::interaction_graph::SurfaceEnergyCreator >	core::init::SurfaceEnergyCreator_registrator
static EnergyMethodRegistrator < pack::interaction_graph::HPatchEnergyCreator >	core::init::HPatchEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SymmetricLigandEnergyCreator >	core::init::SymmetricLigandEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::UnfoldedStateEnergyCreator >	core::init::UnfoldedStateEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SplitUnfoldedTwoBodyEnergyCreator >	core::init::SplitUnfoldedTwoBodyEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::WaterAdductHBondEnergyCreator >	core::init::WaterAdductHBondEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::WaterAdductIntraEnergyCreator >	core::init::WaterAdductIntraEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::WaterSpecificEnergyCreator >	core::init::WaterSpecificEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::HolesEnergyCreator >	core::init::HolesEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SurfVolEnergyCreator >	core::init::SurfVolEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SurfEnergyCreator >	core::init::SurfEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RG_Energy_RNACreator >	core::init::RG_Energy_RNACreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_BulgeEnergyCreator >	core::init::RNA_BulgeEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_ChemicalMappingEnergyCreator >	core::init::RNA_ChemicalMappingEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_DataBackboneEnergyCreator >	core::init::RNA_DataBackboneEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_FullAtomStackingEnergyCreator >	core::init::RNA_FullAtomStackingEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_JR_SuiteEnergyCreator >	core::init::RNA_JR_SuiteEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_LJ_BaseEnergyCreator >	core::init::RNA_LJ_BaseEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_PairwiseLowResolutionEnergyCreator >	core::init::RNA_PairwiseLowResolutionEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_PartitionEnergyCreator >	core::init::RNA_PartitionEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNP_LowResEnergyCreator >	core::init::RNP_LowResEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNP_LowResPairDistEnergyCreator >	core::init::RNP_LowResPairDistEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNP_LowResStackEnergyCreator >	core::init::RNP_LowResStackEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_StubCoordinateEnergyCreator >	core::init::RNA_StubCoordinateEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_SugarCloseEnergyCreator >	core::init::RNA_SugarCloseEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_SuiteEnergyCreator >	core::init::RNA_SuiteEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::TNA_SuiteEnergyCreator >	core::init::TNA_SuiteEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_TorsionEnergyCreator >	core::init::RNA_TorsionEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_VDW_EnergyCreator >	core::init::RNA_VDW_EnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_FullAtomVDW_BasePhosphateCreator >	core::init::RNA_FullAtomVDW_BasePhosphateCreator_registrator
static EnergyMethodRegistrator < energy_methods::StackElecEnergyCreator >	core::init::StackElecEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::RNA_ChemicalShiftEnergyCreator >	core::init::NA_ChemicalShiftEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::sym_e::symECreator >	core::init::symECreator_registrator
static EnergyMethodRegistrator < energy_methods::PoissonBoltzmannEnergyCreator >	core::init::PoissonBoltzmannEnergyCreator_registrator
static EnergyMethodRegistrator < core::energy_methods::RNA_CoarseDistEnergyCreator >	core::init::RNA_CoarseDistEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::FastSAXSEnergyCreator >	core::init::FastSAXSEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::SAXSEnergyCreatorCEN >	core::init::SAXSEnergyCreatorCEN_registrator
static EnergyMethodRegistrator < energy_methods::SAXSEnergyCreatorFA >	core::init::SAXSEnergyCreatorFA_registrator
static EnergyMethodRegistrator < energy_methods::SAXSEnergyCreator >	core::init::SAXSEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::PointWaterEnergyCreator >	core::init::PointWaterEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::FiberDiffractionEnergyCreator >	core::init::FiberDiffractionEnergyCreator_registrator
static EnergyMethodRegistrator < energy_methods::FiberDiffractionEnergyDensCreator >	core::init::FiberDiffractionEnergyDensCreator_registrator
static RotamerLibrarySpecificationRegistrator < chemical::rotamers::BasicRotamerLibrarySpecificationCreator >	core::init::BasicRotamerLibrarySpecificationCreator_registrator
static RotamerLibrarySpecificationRegistrator < chemical::rotamers::CenrotRotamerLibrarySpecificationCreator >	core::init::CenrotRotamerLibrarySpecificationCreator_registrator
static RotamerLibrarySpecificationRegistrator < chemical::rotamers::DunbrackRotamerLibrarySpecificationCreator >	core::init::DunbrackRotamerLibrarySpecificationCreator_registrator
static RotamerLibrarySpecificationRegistrator < chemical::rotamers::NCAARotamerLibrarySpecificationCreator >	core::init::NCAARotamerLibrarySpecificationCreator_registrator
static RotamerLibrarySpecificationRegistrator < chemical::rotamers::PDBRotamerLibrarySpecificationCreator >	core::init::PDBRotamerLibrarySpecificationCreator_registrator
static SingleResidueRotamerLibraryRegistrator < pack::dunbrack::SingleResidueDunbrackLibraryCreator >	core::init::SingleResidueDunbrackLibraryCreator_registrator
static SingleResidueRotamerLibraryRegistrator < pack::rotamers::SingleBasicRotamerLibraryCreator >	core::init::SingleBasicRotamerLibraryCreator_registrator
static SingleResidueRotamerLibraryRegistrator < pack::dunbrack::cenrot::SingleResidueCenrotLibraryCreator >	core::init::SingleCenrotRotamerLibraryCreator_registrator
static SingleResidueRotamerLibraryRegistrator < pack::rotamers::SingleLigandRotamerLibraryCreator >	core::init::SingleLigandRotamerLibraryCreator_registrator
static SingleResidueRotamerLibraryRegistrator < pack::rotamers::SingleNCAARotamerLibraryCreator >	core::init::SingleNCAARotamerLibraryCreator_registrator
static SingleResidueRotamerLibraryRegistrator < pack::rotamers::StoredRotamerLibraryCreator >	core::init::StoredRotamerLibraryCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::AmbiguousConstraintCreator >	core::init::AmbiguousConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::AmbiguousNMRConstraintCreator >	core::init::AmbiguousNMRConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::AmbiguousNMRDistanceConstraintCreator >	core::init::AmbiguousNMRDistanceConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::AngleConstraintCreator >	core::init::AngleConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::AtomPairConstraintCreator >	core::init::AtomPairConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::BasePairConstraintCreator >	core::init::BasePairConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::BigBinConstraintCreator >	core::init::BigBinConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::CoordinateConstraintCreator >	core::init::CoordinateConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::DihedralConstraintCreator >	core::init::DihedralConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::DihedralPairConstraintCreator >	core::init::DihedralPairConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::KofNConstraintCreator >	core::init::KofNConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::LocalCoordinateConstraintCreator >	core::init::LocalCoordinateConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::MultiConstraintCreator >	core::init::MultiConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::NamedAngleConstraintCreator >	core::init::NamedAngleConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::FabConstraintCreator >	core::init::FabConstraintCreator_registrator
static ConstraintRegistrator < core::pack::dunbrack::DunbrackConstraintCreator >	core::init::DunbrackConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::SiteConstraintCreator >	core::init::SiteConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::SiteConstraintResiduesCreator >	core::init::SiteConstraintResiduesCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::SequenceProfileConstraintCreator >	core::init::SequenceProfileConstraintCreator_registrator
static SilentStructRegistrator < core::io::silent::ProteinSilentStructCreator >	core::init::ProteinSilentStructCreator_registrator
static SilentStructRegistrator < core::io::silent::ProteinSilentStruct_SinglePrecCreator >	core::init::ProteinSilentStruct_SinglePrecCreator_registrator
static SilentStructRegistrator < core::io::silent::RNA_SilentStructCreator >	core::init::RNA_SilentStructCreator_registrator
static SilentStructRegistrator < core::import_pose::PDBSilentStructCreator >	core::init::PDBSilentStructCreator_registrator
static SilentStructRegistrator < core::io::silent::BinarySilentStructCreator >	core::init::BinarySilentStructCreator_registrator
static SilentStructRegistrator < core::io::silent::ScoreFileSilentStructCreator >	core::init::ScoreFileSilentStructCreator_registrator
static SilentStructRegistrator < core::io::silent::ScoreJumpFileSilentStructCreator >	core::init::ScoreJumpFileSilentStructCreator_registrator
static SilentStructRegistrator < core::io::silent::RigidBodySilentStructCreator >	core::init::RigidBodySilentStructCreator_registrator
static SequenceRegistrator < core::sequence::SimpleSequenceCreator >	core::init::SimpleSequenceCreator_registrator
static SequenceRegistrator < core::sequence::SequenceProfileCreator >	core::init::SequenceProfileCreator_registrator
static SequenceRegistrator < core::sequence::SequenceCouplingCreator >	core::init::SequenceCouplingCreator_registrator
static SequenceRegistrator < core::sequence::CompositeSequenceCreator >	core::init::CompositeSequenceCreator_registrator
static TaskOperationRegistrator < RestrictYSDesignCreator >	core::init::RestrictYSDesignCreator_registrator
static TaskOperationRegistrator < PreventRepackingCreator >	core::init::PreventRepackingCreator_registrator
static TaskOperationRegistrator < PreserveCBetaCreator >	core::init::PreserveCBetaCreator_registrator
static TaskOperationRegistrator < AppendRotamerSetCreator >	core::init::AppendRotamerSetCreator_registrator
static TaskOperationRegistrator < AppendRotamerCreator >	core::init::AppendRotamerCreator_registrator
static TaskOperationRegistrator < DesignRestrictionsCreator >	core::init::DesignRestrictionsCreator_registrator
static TaskOperationRegistrator < EnableMultiCoolAnnealerCreator >	core::init::EnableMultiCoolAnnealerCreator_registrator
static TaskOperationRegistrator < EnableSmartAnnealerCreator >	core::init::EnableSmartAnnealerCreator_registrator
static TaskOperationRegistrator < ExtraRotamersCreator >	core::init::ExtraRotamersCreator_registrator
static TaskOperationRegistrator < ExtraChiCutoffCreator >	core::init::ExtraChiCutoffCreator_registrator
static TaskOperationRegistrator < SetRotamerCouplingsCreator >	core::init::SetRotamerCouplingsCreator_registrator
static TaskOperationRegistrator < SetRotamerLinksCreator >	core::init::SetRotamerLinksCreator_registrator
static TaskOperationRegistrator < ReadResfileCreator >	core::init::ReadResfileCreator_registrator
static TaskOperationRegistrator < ReadResfileAndObeyLengthEventsCreator >	core::init::ReadResfileAndObeyLengthEventsCreator_registrator
static TaskOperationRegistrator < IncludeCurrentCreator >	core::init::IncludeCurrentCreator_registrator
static TaskOperationRegistrator < InitializeExtraRotsFromCommandlineCreator >	core::init::InitializeExtraRotsFromCommandlineCreator_registrator
static TaskOperationRegistrator < InitializeFromCommandlineCreator >	core::init::InitializeFromCommandlineCreator_registrator
static TaskOperationRegistrator < UseMultiCoolAnnealerCreator >	core::init::UseMultiCoolAnnealerCreator_registrator
static TaskOperationRegistrator < InitializeFromOptionCollectionCreator >	core::init::InitializeFromOptionCollectionCreator_registrator
static TaskOperationRegistrator < ExtraRotamersGenericCreator >	core::init::ExtraRotamersGenericCreator_registrator
static TaskOperationRegistrator < RotamerExplosionCreator >	core::init::RotamerExplosionCreator_registrator
static TaskOperationRegistrator < RestrictAbsentCanonicalAASCreator >	core::init::RestrictAbsentCanonicalAASCreator_registrator
static TaskOperationRegistrator < DisallowIfNonnativeCreator >	core::init::DisallowIfNonnativeCreator_registrator
static TaskOperationRegistrator < RestrictToSpecifiedBaseResidueTypesCreator >	core::init::RestrictToSpecifiedBaseResidueTypesCreator_registrator
static TaskOperationRegistrator < ProhibitSpecifiedBaseResidueTypesCreator >	core::init::ProhibitSpecifiedBaseResidueTypesCreator_registrator
static TaskOperationRegistrator < RestrictToResiduePropertiesCreator >	core::init::RestrictToResiduePropertiesCreator_registrator
static TaskOperationRegistrator < ProhibitResiduePropertiesCreator >	core::init::ProhibitResiduePropertiesCreator_registrator
static TaskOperationRegistrator < RestrictResidueToRepackingCreator >	core::init::RestrictResidueToRepackingCreator_registrator
static TaskOperationRegistrator < RestrictToRepackingCreator >	core::init::RestrictToRepackingCreator_registrator
static TaskOperationRegistrator < RestrictInteractionGraphThreadsOperationCreator >	core::init::RestrictInteractionGraphThreadsOperationCreator_registrator
static TaskOperationRegistrator < OperateOnCertainResiduesCreator >	core::init::OperateOnCertainResiduesCreator_registrator
static TaskOperationRegistrator < OperateOnResidueSubsetCreator >	core::init::OperateOnResidueSubsetCreator_registrator
static TaskOperationRegistrator < NoRepackDisulfidesCreator >	core::init::NoRepackDisulfidesCreator_registrator
static TaskOperationRegistrator < ClashBasedRepackShellCreator >	core::init::ClashBasedRepackShellCreator_registrator
static TaskOperationRegistrator < OptCysHGCreator >	core::init::OptCysHGCreator_registrator
static TaskOperationRegistrator < OptHCreator >	core::init::OptHCreator_registrator
static TaskOperationRegistrator < KeepSequenceSymmetryCreator >	core::init::KeepSequenceSymmetryCreator_registrator
static ResLvlTaskOperationRegistrator < RestrictToRepackingRLTCreator >	core::init::RestrictToRepackingRLTCreator_registrator
static ResLvlTaskOperationRegistrator < RestrictAbsentCanonicalAASRLTCreator >	core::init::RestrictAbsentCanonicalAASRLTCreator_registrator
static ResLvlTaskOperationRegistrator < RestrictAbsentCanonicalAASExceptNativeRLTCreator >	core::init::RestrictAbsentCanonicalAASExceptNativeRLTCreator_registrator
static ResLvlTaskOperationRegistrator < DisallowIfNonnativeRLTCreator >	core::init::DisallowIfNonnativeRLTCreator_registrator
static ResLvlTaskOperationRegistrator < PreventRepackingRLTCreator >	core::init::PreventRepackingRLTCreator_registrator
static ResLvlTaskOperationRegistrator < AddBehaviorRLTCreator >	core::init::AddBehaviorRLTCreator_registrator
static ResLvlTaskOperationRegistrator < IncludeCurrentRLTCreator >	core::init::IncludeCurrentRLTCreator_registrator
static ResLvlTaskOperationRegistrator < PreserveCBetaRLTCreator >	core::init::PreserveCBetaRLTCreator_registrator
static ResLvlTaskOperationRegistrator < ExtraChiCutoffRLTCreator >	core::init::ExtraChiCutoffRLTCreator_registrator
static ResLvlTaskOperationRegistrator < ExtraRotamersGenericRLTCreator >	core::init::ExtraRotamersGenericRLTCreator_registrator
static ResFilterRegistrator < ResidueHasPropertyCreator >	core::init::ResidueHasPropertyCreator_registrator
static ResFilterRegistrator < ResiduePDBInfoHasLabelCreator >	core::init::ResiduePDBInfoHasLabelCreator_registrator
static ResFilterRegistrator < ResidueLacksPropertyCreator >	core::init::ResidueLacksPropertyCreator_registrator
static ResFilterRegistrator < ResidueName3IsCreator >	core::init::ResidueName3IsCreator_registrator
static ResFilterRegistrator < ResidueName3IsntCreator >	core::init::ResidueName3IsntCreator_registrator
static ResFilterRegistrator < ResidueIndexIsCreator >	core::init::ResidueIndexIsCreator_registrator
static ResFilterRegistrator < ResidueIndexIsntCreator >	core::init::ResidueIndexIsntCreator_registrator
static ResFilterRegistrator < ChainIsCreator >	core::init::ChainIsCreator_registrator
static ResFilterRegistrator < ChainIsntCreator >	core::init::ChainIsntCreator_registrator
static ResFilterRegistrator < AnyResFilterCreator >	core::init::AnyResFilterCreator_registrator
static ResFilterRegistrator < AllResFilterCreator >	core::init::AllResFilterCreator_registrator
static ResFilterRegistrator < NoResFilterCreator >	core::init::NoResFilterCreator_registrator
static ResFilterRegistrator < ResidueTypeFilterCreator >	core::init::ResidueTypeResFilterCreator_registrator
static ResidueSelectorRegistrator < AndResidueSelectorCreator >	core::init::reg_AndResidueSelectorCreator
static ResidueSelectorRegistrator < BinSelectorCreator >	core::init::reg_BinSelectorCreator
static ResidueSelectorRegistrator < BondedResidueSelectorCreator >	core::init::reg_BondedResidueSelectorCreator
static ResidueSelectorRegistrator < ChainSelectorCreator >	core::init::reg_ChainSelectorCreator
static ResidueSelectorRegistrator < core::pack::task::residue_selector::ClashBasedShellSelectorCreator >	core::init::reg_ClashBasedShellSelectorCreator
static ResidueSelectorRegistrator < CloseContactResidueSelectorCreator >	core::init::reg_CloseContactResidueSelectorCreator
static ResidueSelectorRegistrator < DensityFitResidueSelectorCreator >	core::init::reg_DensityFitResidueSelectorCreator
static ResidueSelectorRegistrator < GlycanResidueSelectorCreator >	core::init::reg_GlycanResidueSelectorCreator
static ResidueSelectorRegistrator < RandomGlycanFoliageSelectorCreator >	core::init::reg_RandomGlycanFoliageSelectorCreator
static ResidueSelectorRegistrator < GlycanLayerSelectorCreator >	core::init::reg_GlycanLayerSelectorCreator
static ResidueSelectorRegistrator < GlycanSequonsSelectorCreator >	core::init::reg_GlycanSequonsSelectorCreator
static ResidueSelectorRegistrator < InterGroupInterfaceByVectorSelectorCreator >	core::init::reg_InterGroupInterfaceByVectorSelectorCreator
static ResidueSelectorRegistrator < JumpDownstreamSelectorCreator >	core::init::reg_JumpDownstreamSelectorCreator
static ResidueSelectorRegistrator < JumpUpstreamSelectorCreator >	core::init::reg_JumpUpstreamSelectorCreator
static ResidueSelectorRegistrator < AsymmetricUnitSelectorCreator >	core::init::reg_AsymmetricUnitSelectorCreator
static ResidueSelectorRegistrator < LogicResidueSelectorCreator >	core::init::reg_LogicResidueSelectorCreator
static ResidueSelectorRegistrator < NeighborhoodResidueSelectorCreator >	core::init::reg_NeighborhoodResidueSelectorCreator
static ResidueSelectorRegistrator < NotResidueSelectorCreator >	core::init::reg_NotResidueSelectorCreator
static ResidueSelectorRegistrator < NumNeighborsSelectorCreator >	core::init::reg_NumNeighborsSelectorCreator
static ResidueSelectorRegistrator < LayerSelectorCreator >	core::init::reg_LayerSelectorCreator
static ResidueSelectorRegistrator < OrResidueSelectorCreator >	core::init::reg_OrResidueSelectorCreator
static ResidueSelectorRegistrator < PhiSelectorCreator >	core::init::reg_PhiSelectorCreator
static ResidueSelectorRegistrator < PrimarySequenceNeighborhoodSelectorCreator >	core::init::reg_PrimarySequenceNeighborhoodSelectorCreator
static ResidueSelectorRegistrator < RandomResidueSelectorCreator >	core::init::reg_RandomResidueSelectorCreator
static ResidueSelectorRegistrator < ResidueIndexSelectorCreator >	core::init::reg_ResidueIndexSelectorCreator
static ResidueSelectorRegistrator < ResidueNameSelectorCreator >	core::init::reg_ResidueNameSelectorCreator
static ResidueSelectorRegistrator < ResidueInSequenceMotifSelectorCreator >	core::init::reg_ResidueInSequenceMotifSelectorCreator
static ResidueSelectorRegistrator < ResiduePropertySelectorCreator >	core::init::reg_ResiduePropertySelectorCreator
static ResidueSelectorRegistrator < ResidueSpanSelectorCreator >	core::init::reg_ResidueSpanSelectorCreator
static ResidueSelectorRegistrator < TrueResidueSelectorCreator >	core::init::reg_TrueResidueSelectorCreator
static ResidueSelectorRegistrator < FalseResidueSelectorCreator >	core::init::reg_FalseResidueSelectorCreator
static ResidueSelectorRegistrator < ResidueInMembraneSelectorCreator >	core::init::reg_ResidueInMembraneSelectorCreator
static ResidueSelectorRegistrator < ResiduePDBInfoHasLabelSelectorCreator >	core::init::reg_ResiduePDBInfoHasLabelSelectorCreator
static ResidueSelectorRegistrator < SecondaryStructureSelectorCreator >	core::init::reg_SecondaryStructureSelectorCreator
static ResidueSelectorRegistrator < SSElementSelectorCreator >	core::init::reg_SSElementSelectorCreator
static ResidueSelectorRegistrator < SymmetricalResidueSelectorCreator >	core::init::reg_SymmetricalResidueSelectorCreator
static ResidueSelectorRegistrator < ScoreTermValueBasedSelectorCreator >	core::init::reg_ScoreTermValueBasedSelectorCreator
static ResidueSelectorRegistrator < SliceResidueSelectorCreator >	core::init::reg_SliceResidueSelectorCreator
static ResidueSelectorRegistrator < SimpleMetricSelectorCreator >	core::init::reg_SimpleMetricSelectorCreator
static JumpSelectorRegistrator < AndJumpSelectorCreator >	core::init::reg_AndJumpSelectorCreator
static JumpSelectorRegistrator < OrJumpSelectorCreator >	core::init::reg_OrJumpSelectorCreator
static JumpSelectorRegistrator < NotJumpSelectorCreator >	core::init::reg_NotJumpSelectorCreator
static JumpSelectorRegistrator < JumpIndexSelectorCreator >	core::init::reg_JumpIndexSelectorCreator
static JumpSelectorRegistrator < InterchainJumpSelectorCreator >	core::init::reg_InterchainJumpSelectorCreator
static PackerPaletteRegistrator < CustomBaseTypePackerPaletteCreator >	core::init::reg_CustomBaseTypePackerPaletteCreator
static PackerPaletteRegistrator < DefaultPackerPaletteCreator >	core::init::reg_DefaultPackerPaletteCreator
static PackerPaletteRegistrator < NoDesignPackerPaletteCreator >	core::init::reg_NoDesignPackerPaletteCreator
static ResourceLoaderRegistrator < core::conformation::symmetry::SymmDataLoaderCreator >	core::init::SymmDataLoaderCreator_registrator
static ResourceLoaderRegistrator < core::import_pose::PoseResourceLoaderCreator >	core::init::PoseResourceLoaderCreator_registrator

Detailed Description

options system initialization routines

Author

Sergey Lyskov

Macro Definition Documentation

#define PROCESS_STACK_SIZE   (32 * 1024 * 1024)

Referenced by core::init::init_resources().

Typedef Documentation

using ostringstream_t = std::ostringstream