RNA_HelixAssembler.cc File Reference

make a helix that is low energy in Rosetta More...

#include <core/import_pose/RNA_HelixAssembler.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/PDBInfo.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/sequence/util.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pose/rna/util.hh>
#include <core/io/pdb/build_pose_as_is.hh>
#include <core/chemical/rna/util.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/types.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzVector.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/database/open.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <vector>
#include <string>
#include <sstream>
#include <core/pose/annotated_sequence.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::import_pose

Typedefs
using	Matrix = numeric::xyzMatrix< Real >

Functions
static basic::Tracer	TR ("protocols.rna.movers.RNA_HelixAssembler")
bool	core::import_pose::is_blank_seq (char const &c)

Detailed Description

make a helix that is low energy in Rosetta

Adds ideal base pairs one at a time and minimizes.

Author

Rhiju Das

Typedef Documentation

using Matrix = numeric::xyzMatrix<Real>

Function Documentation

static basic::Tracer TR ( "protocols.rna.movers.RNA_HelixAssembler"  )

static