core::scoring::TMscoreStore Class Reference

#include <TMscore.hh>

Public Member Functions
	TMscoreStore ()
	~TMscoreStore ()=default
void	set_nseq (core::Size const nseq)
void	clear ()
void	add_residue_dis (core::Real const d0, core::Real const dis)
void	update ()
void	apply ()

Public Attributes
core::Real	n_cut
core::Real	nseq_
core::Real	nseq_ref_
core::Real	TM
core::Real	TM10
core::Real	GDTTS
core::Real	GDTHA
core::Real	maxsub
core::Real	TM_sum
core::Real	TM_sum10
core::Real	maxsub_sum
core::Size	n_GDT05
core::Size	n_GDT1
core::Size	n_GDT2
core::Size	n_GDT4
core::Size	n_GDT8
core::Real	TM_max
core::Real	TM10_max
core::Real	maxsub_max
core::Size	n_GDT05_max
core::Size	n_GDT1_max
	number of residues<0.5; More...
core::Size	n_GDT2_max
	number of residues<1; More...
core::Size	n_GDT4_max
	number of residues<2; More...
core::Size	n_GDT8_max
	number of residues<4; More...

Constructor & Destructor Documentation

core::scoring::TMscoreStore::TMscoreStore ( )

inline

References clear(), GDTHA, GDTTS, maxsub, maxsub_max, n_GDT05_max, n_GDT1_max, n_GDT2_max, n_GDT4_max, n_GDT8_max, TM, TM10, TM10_max, and TM_max.

core::scoring::TMscoreStore::~TMscoreStore ( )

default

Member Function Documentation

void core::scoring::TMscoreStore::add_residue_dis ( core::Real const  d0, core::Real const  dis  )

inline

References protocols::hybridization::d0, maxsub_sum, n_GDT05, n_GDT1, n_GDT2, n_GDT4, n_GDT8, TM_sum, and TM_sum10.

Referenced by core::scoring::TMscore::score_fun().

void core::scoring::TMscoreStore::apply ( )

inline

References GDTHA, GDTTS, maxsub, maxsub_sum, n_GDT05_max, n_GDT1_max, n_GDT2_max, n_GDT4_max, n_GDT8_max, nseq_, TM, TM10, TM_sum, and TM_sum10.

Referenced by core::scoring::TMscore::score_fun().

void core::scoring::TMscoreStore::clear ( )

inline

References maxsub_sum, n_GDT05, n_GDT1, n_GDT2, n_GDT4, n_GDT8, TM_sum, and TM_sum10.

Referenced by core::scoring::TMscore::score_fun(), and TMscoreStore().

void core::scoring::TMscoreStore::set_nseq ( core::Size const  nseq )

inline

References nseq_.

void core::scoring::TMscoreStore::update ( )

inline

References maxsub, maxsub_max, n_GDT05, n_GDT05_max, n_GDT1, n_GDT1_max, n_GDT2, n_GDT2_max, n_GDT4, n_GDT4_max, n_GDT8, n_GDT8_max, TM, TM10, TM10_max, and TM_max.

Referenced by core::scoring::TMscore::extend(), and core::scoring::TMscore::score_fun().

Member Data Documentation

core::Real core::scoring::TMscoreStore::GDTHA

Referenced by apply(), core::scoring::TMscore::get_GDTHA(), and TMscoreStore().

core::Real core::scoring::TMscoreStore::GDTTS

Referenced by apply(), core::scoring::TMscore::get_GDTTS(), and TMscoreStore().

core::Real core::scoring::TMscoreStore::maxsub

Referenced by apply(), TMscoreStore(), and update().

core::Real core::scoring::TMscoreStore::maxsub_max

Referenced by TMscoreStore(), and update().

core::Real core::scoring::TMscoreStore::maxsub_sum

Referenced by add_residue_dis(), apply(), and clear().

core::Real core::scoring::TMscoreStore::n_cut

core::Size core::scoring::TMscoreStore::n_GDT05

Referenced by add_residue_dis(), clear(), and update().

core::Size core::scoring::TMscoreStore::n_GDT05_max

Referenced by apply(), TMscoreStore(), and update().

core::Size core::scoring::TMscoreStore::n_GDT1

Referenced by add_residue_dis(), clear(), and update().

core::Size core::scoring::TMscoreStore::n_GDT1_max

number of residues<0.5;

Referenced by apply(), TMscoreStore(), and update().

core::Size core::scoring::TMscoreStore::n_GDT2

Referenced by add_residue_dis(), clear(), and update().

core::Size core::scoring::TMscoreStore::n_GDT2_max

number of residues<1;

Referenced by apply(), TMscoreStore(), and update().

core::Size core::scoring::TMscoreStore::n_GDT4

Referenced by add_residue_dis(), clear(), and update().

core::Size core::scoring::TMscoreStore::n_GDT4_max

number of residues<2;

Referenced by apply(), TMscoreStore(), and update().

core::Size core::scoring::TMscoreStore::n_GDT8

Referenced by add_residue_dis(), clear(), and update().

core::Size core::scoring::TMscoreStore::n_GDT8_max

number of residues<4;

Referenced by apply(), TMscoreStore(), and update().

core::Real core::scoring::TMscoreStore::nseq_

Referenced by apply(), and set_nseq().

core::Real core::scoring::TMscoreStore::nseq_ref_

core::Real core::scoring::TMscoreStore::TM

Referenced by apply(), core::scoring::TMscore::extend(), TMscoreStore(), and update().

core::Real core::scoring::TMscoreStore::TM10

Referenced by apply(), TMscoreStore(), and update().

core::Real core::scoring::TMscoreStore::TM10_max

Referenced by TMscoreStore(), and update().

core::Real core::scoring::TMscoreStore::TM_max

Referenced by core::scoring::TMscore::extend(), core::scoring::TMscore::get_TMscore(), TMscoreStore(), and update().

core::Real core::scoring::TMscoreStore::TM_sum

Referenced by add_residue_dis(), apply(), and clear().

core::Real core::scoring::TMscoreStore::TM_sum10

Referenced by add_residue_dis(), apply(), and clear().

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The documentation for this class was generated from the following file:

• src/core/scoring/TMscore.hh