AlignPDBInfoToSequencesUtil.cc File Reference

helper functions for AlignPDBInfoToSequences More...

#include <protocols/pdbinfo_manipulations/AlignPDBInfoToSequencesUtil.hh>
#include <core/sequence/Sequence.hh>
#include <basic/Tracer.hh>
#include <utility/string_util.hh>
#include <string>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::pdbinfo_manipulations

Functions
static basic::Tracer	TR ("protocols.pdbinfo_manipulations.AlignPDBInfoToSequencesUtil")
void	protocols::pdbinfo_manipulations::pad_sequences (std::string const &full_seq_1, core::sequence::SequenceOP const &aln_seq_1, std::string const &full_seq_2, core::sequence::SequenceOP const &aln_seq_2)
	Take two sequences that have been aligned, and their parent sequences and align/pad them with '-' as shown below: More...

Detailed Description

helper functions for AlignPDBInfoToSequences

Author

Dan Farrell (danpf.nosp@m.@uw..nosp@m.edu)

Function Documentation

static basic::Tracer TR ( "protocols.pdbinfo_manipulations.AlignPDBInfoToSequencesUtil"  )

static