| acceptorList | protocols::sparta::PDB | |
| arccos_(float x) | protocols::sparta::PDB | private |
| AtomEntries typedef | protocols::sparta::PDB | |
| ATOMS | protocols::sparta::PDB | |
| AtomsMap typedef | protocols::sparta::PDB | |
| AtomSurfaceFullList | protocols::sparta::PDB | |
| AtomSurfacePartList | protocols::sparta::PDB | |
| calc_ElectricField() | protocols::sparta::PDB | |
| calc_HN_S2() | protocols::sparta::PDB | |
| calcPlane(RingData *ringP) | protocols::sparta::PDB | |
| calcSurface(float rad_sol) | protocols::sparta::PDB | |
| calcTriangles(core::Real x0, core::Real y0, core::Real z0, core::Real x1, core::Real y1, core::Real z1, core::Real x2, core::Real y2, core::Real z2, int rowStartA[], int rowNo, int quad, int row0, int ind0, int ind1, int row2, int ind2, Vec3 *pointA) | protocols::sparta::PDB | |
| collect_HN_S2_and_EF() | protocols::sparta::PDB | |
| Conformers | protocols::sparta::PDB | |
| donorList | protocols::sparta::PDB | |
| ElectricField | protocols::sparta::PDB | |
| EMPTY | protocols::sparta::PDB | |
| EntryMap typedef | protocols::sparta::PDB | |
| findNeighors(float rad_sol) | protocols::sparta::PDB | |
| getBondAngle(Vec3 A, Vec3 B, Vec3 C) | protocols::sparta::PDB | |
| getBondAngle(PDB_Entry a, PDB_Entry b, PDB_Entry c) | protocols::sparta::PDB | |
| getChi1(int conformerID, int resNum) | protocols::sparta::PDB | |
| getChi2(int conformerID, int resNum) | protocols::sparta::PDB | |
| getDihedralAngle(PDB_Entry a, PDB_Entry b, PDB_Entry c, PDB_Entry d) | protocols::sparta::PDB | |
| getDist(Vec3 A, Vec3 B) | protocols::sparta::PDB | |
| getDist(PDB_Entry A, PDB_Entry B) | protocols::sparta::PDB | |
| getEntry(int conformerID, int rNum, const std::string &aName) | protocols::sparta::PDB | |
| getEntry(int conformerID, int aNum) | protocols::sparta::PDB | |
| getField(const std::string &str, int index) | protocols::sparta::PDB | |
| getHBondDist(PDB_Entry D) | protocols::sparta::PDB | |
| getHBondDist(int resNum, std::string atomName) | protocols::sparta::PDB | |
| getOmega(int conformerID, int resNum) | protocols::sparta::PDB | |
| getOneAAName(const std::string &a) | protocols::sparta::PDB | |
| getOrbitalShift(int conformerID, int resNum, const std::string &aName) | protocols::sparta::PDB | |
| getPhi(int conformerID, int resNum) | protocols::sparta::PDB | |
| getPsi(int conformerID, int resNum) | protocols::sparta::PDB | |
| getThreeAAName(char a) | protocols::sparta::PDB | |
| HB_DHO_AngleList | protocols::sparta::PDB | |
| HB_HOA_AngleList | protocols::sparta::PDB | |
| HBDistList | protocols::sparta::PDB | |
| HBEnergyList | protocols::sparta::PDB | |
| HBondMap typedef | protocols::sparta::PDB | |
| HN_S2 | protocols::sparta::PDB | |
| initHBond(float DIST=3.5, float ANGLE=35) | protocols::sparta::PDB | |
| initOrbitalShift() | protocols::sparta::PDB | |
| InnerHBondMap typedef | protocols::sparta::PDB | |
| isAcceptor(PDB_Entry A) | protocols::sparta::PDB | |
| isDonor(PDB_Entry D) | protocols::sparta::PDB | |
| isSSBonded(int conformerID, int resNum) | protocols::sparta::PDB | |
| loadPDB(const std::string &fileName) | protocols::sparta::PDB | |
| loadPDB(std::istream &file) | protocols::sparta::PDB | |
| loadPDB(core::pose::Pose const &pose) | protocols::sparta::PDB | |
| loadPDB_Entry(const std::string &str, PDB_Entry &entry) | protocols::sparta::PDB | |
| Mat3VecMult(Vec3 v, Mat3 m) | protocols::sparta::PDB | private |
| NeighborList | protocols::sparta::PDB | |
| PairList typedef | protocols::sparta::PDB | |
| PDB() | protocols::sparta::PDB | |
| PDB(const std::string &fileName) | protocols::sparta::PDB | |
| PDBfileName | protocols::sparta::PDB | |
| r1 | protocols::sparta::PDB | |
| residList | protocols::sparta::PDB | |
| residListOne | protocols::sparta::PDB | |
| ResSurfaceFullList | protocols::sparta::PDB | |
| ResSurfacePartList | protocols::sparta::PDB | |
| RingNo | protocols::sparta::PDB | |
| Rings | protocols::sparta::PDB | |
| rN | protocols::sparta::PDB | |
| sgn(float x) | protocols::sparta::PDB | private |
| SpherePointNo | protocols::sparta::PDB | |
| SpherePoints | protocols::sparta::PDB | |
| SurfPrec | protocols::sparta::PDB | |
| VDW_RAD | protocols::sparta::PDB | |
| Vec3Abs(Vec3 const v) | protocols::sparta::PDB | private |
| Vec3Add(Vec3 v1, Vec3 const v2) | protocols::sparta::PDB | private |
| Vec3Copy(Vec3 v1, Vec3 const v2) | protocols::sparta::PDB | private |
| Vec3Cross(Vec3 v1, Vec3 const v2) | protocols::sparta::PDB | private |
| Vec3DiffAbs(Vec3 const v1, Vec3 const v2) | protocols::sparta::PDB | private |
| Vec3Norm(Vec3 v) | protocols::sparta::PDB | private |
| Vec3Scalar(Vec3 const v1, Vec3 const v2) | protocols::sparta::PDB | private |
| Vec3Scale(Vec3 v, float s) | protocols::sparta::PDB | private |
| Vec3ScaleAdd(Vec3 v1, float s, Vec3 const v2) | protocols::sparta::PDB | private |
| Vec3Sub(Vec3 v1, Vec3 const v2) | protocols::sparta::PDB | private |
| Vec3Zero(Vec3 v) | protocols::sparta::PDB | private |
1.8.7