core::fragment::JumpingFrame Member List

This is the complete list of members for core::fragment::JumpingFrame, including all inherited members.

_static_type_name()	core::fragment::JumpingFrame	inlinestatic
add_fragment(FragDataCOP new_frag)	core::fragment::Frame
add_fragment(FragDataCOPs new_frags)	core::fragment::Frame
align(core::id::SequenceMapping const &map) override	core::fragment::NonContinuousFrame	virtual
apply(kinematics::MoveMap const &, core::Size frag_num, pose::Pose &pose) const	core::fragment::Frame
apply(core::Size frag_num, pose::Pose &pose) const	core::fragment::Frame
apply_ss(kinematics::MoveMap const &, core::Size frag_num, std::string &ss) const	core::fragment::Frame
cache(std::string tag, BaseCacheUnitOP const &new_cache) const	core::fragment::Frame
clear()	core::fragment::Frame
clone() const override	core::fragment::JumpingFrame	inlinevirtual
clone_cache_data(Frame const &source, core::Size sid, core::Size nid)	core::fragment::Frame
clone_with_frags() const	core::fragment::Frame	virtual
clone_with_template()	core::fragment::Frame	virtual
contains_seqpos(core::Size seqpos) const	core::fragment::Frame
end() const	core::fragment::Frame
frag_id(core::Size frag_num) const	core::fragment::Frame
fragment(core::Size frag_num) const	core::fragment::Frame
fragment_as_pose(core::Size frag_num, pose::Pose &pose, chemical::ResidueTypeSetCAP restype_set) const	core::fragment::Frame
fragment_ptr(core::Size frag_num) const	core::fragment::Frame
Frame()	core::fragment::Frame
Frame(core::Size begin, core::Size end, core::Size nr_res)	core::fragment::Frame
Frame(core::Size start, core::Size length)	core::fragment::Frame
Frame(core::Size start)	core::fragment::Frame
Frame(core::Size start, FragDataCOP const &frag1)	core::fragment::Frame
Frame(core::Size start, core::Size length, SingleResidueFragDataOP srfd)	core::fragment::Frame
generate_sub_frame(Size length, Size start=1) const	core::fragment::Frame
init_length(core::Size start, core::Size end, core::Size length)	core::fragment::Frame	protected
is_applicable(kinematics::MoveMap const &) const	core::fragment::Frame
is_compatible(FragDataCOP new_frag) const	core::fragment::Frame	protected
is_continuous() const override	core::fragment::NonContinuousFrame	inlinevirtual
is_mergeable(Frame const &other) const	core::fragment::Frame
is_valid() const	core::fragment::Frame
JumpingFrame()	core::fragment::JumpingFrame	inline
JumpingFrame(Size start, Size end, Size length)	core::fragment::JumpingFrame	inline
length() const	core::fragment::Frame
merge(Frame const &other)	core::fragment::Frame
moves_residue(core::Size pos) const override	core::fragment::NonContinuousFrame	inlinevirtual
NonContinuousFrame(Size start, Size end, Size length)	core::fragment::NonContinuousFrame	inline
nr_frags() const	core::fragment::Frame
nr_res_affected(kinematics::MoveMap const &mm) const	core::fragment::Frame
pos()	core::fragment::NonContinuousFrame	inlineprotected
pos() const	core::fragment::NonContinuousFrame	inlineprotected
read(std::istream &) override	core::fragment::NonContinuousFrame	virtual
seqpos(core::Size intra_pos) const override	core::fragment::NonContinuousFrame	inlinevirtual
set_pos(Size intra_pos, Size setting)	core::fragment::NonContinuousFrame	inline
shift_by(int offset) override	core::fragment::NonContinuousFrame	virtual
shift_to(core::Size setting) override	core::fragment::NonContinuousFrame	virtual
show(std::ostream &) const override	core::fragment::NonContinuousFrame	virtual
show_classic(std::ostream &out) const	core::fragment::Frame	virtual
show_fragments(std::ostream &out) const	core::fragment::Frame	protectedvirtual
show_header(std::ostream &out) const	core::fragment::Frame	virtual
show_pos(std::ostream &out) const	core::fragment::NonContinuousFrame	protected
start() const	core::fragment::Frame
steal(pose::Pose const &pose)	core::fragment::Frame
stop() const	core::fragment::Frame
type() const override	core::fragment::JumpingFrame	inlinevirtual
~Frame() override	core::fragment::Frame