MHCEpitopeEnergy.cc File Reference

#include <core/energy_methods/MHCEpitopeEnergy.hh>
#include <core/energy_methods/MHCEpitopeEnergyCreator.hh>
#include <core/scoring/mhc_epitope_energy/MHCEpitopeEnergySetup.hh>
#include <core/scoring/methods/EnergyMethod.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ResidueType.hh>
#include <core/pose/Pose.hh>
#include <utility/numbers.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/aa_composition_energy/SequenceConstraint.hh>
#include <core/scoring/mhc_epitope_energy/MHCEpitopeConstraint.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/database/open.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <utility/string_util.hh>
#include <utility/file/file_sys_util.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/pose/symmetry/util.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <utility/pointer/owning_ptr.hh>
#include <utility/pointer/memory.hh>
#include <core/scoring/mhc_epitope_energy/MHCEpitopePredictor.hh>
#include <core/scoring/mhc_epitope_energy/MHCEpitopePredictorMatrix.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::energy_methods

Functions
static basic::Tracer	core::energy_methods::TR ("core.energy_methods.MHCEpitopeEnergy")
std::string	core::energy_methods::get_seq (utility::vector1< core::conformation::ResidueCOP > const &reslist, utility::vector1< core::Size > &symm_multipliers)
	Helper for testing – returns the AA sequence, with X for noncanonical and space between chains. More...