protocols::task_operations::AlignedThreadOperation Class Reference

#include <AlignedThreadOperation.hh>

Inheritance diagram for protocols::task_operations::AlignedThreadOperation:

Public Types
typedef RestrictOperationsBase	parent
Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	AlignedThreadOperation ()
	~AlignedThreadOperation () override
TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	parse_tag (TagCOP, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
std::string	alignment_file () const
void	alignment_file (std::string const &s)
std::string	query_name () const
void	query_name (std::string const &s)
std::string	template_name () const
void	template_name (std::string const &s)
void	start_res (core::Size const s)
core::Size	start_res () const
Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()
	~RestrictOperationsBase () override
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
std::string	alignment_file_
std::string	query_name_
std::string	template_name_
core::Size	start_res_

Additional Inherited Members
Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

typedef RestrictOperationsBase protocols::task_operations::AlignedThreadOperation::parent

Constructor & Destructor Documentation

protocols::task_operations::AlignedThreadOperation::AlignedThreadOperation

(

)

protocols::task_operations::AlignedThreadOperation::~AlignedThreadOperation ( )

overridedefault

Member Function Documentation

std::string protocols::task_operations::AlignedThreadOperation::alignment_file ( ) const

inline

References alignment_file_.

Referenced by apply(), and parse_tag().

void protocols::task_operations::AlignedThreadOperation::alignment_file ( std::string const &  s )

inline

References alignment_file_.

void protocols::task_operations::AlignedThreadOperation::apply ( core::pose::Pose const &  , core::pack::task::PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements protocols::task_operations::RestrictOperationsBase.

References alignment_file(), protocols::task_operations::ThreadSequenceOperation::apply(), query_name(), protocols::task_operations::ThreadSequenceOperation::start_res(), start_res(), protocols::task_operations::ThreadSequenceOperation::target_sequence(), template_name(), and protocols::task_operations::TR().

core::pack::task::operation::TaskOperationOP protocols::task_operations::AlignedThreadOperation::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

static std::string protocols::task_operations::AlignedThreadOperation::keyname ( )

inlinestatic

Referenced by protocols::task_operations::AlignedThreadOperationCreator::keyname(), and provide_xml_schema().

void protocols::task_operations::AlignedThreadOperation::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References alignment_file(), query_name(), start_res(), template_name(), and protocols::task_operations::TR().

void protocols::task_operations::AlignedThreadOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::task_operations::AlignedThreadOperationCreator::provide_xml_schema().

std::string protocols::task_operations::AlignedThreadOperation::query_name ( ) const

inline

References query_name_.

Referenced by apply(), and parse_tag().

void protocols::task_operations::AlignedThreadOperation::query_name ( std::string const &  s )

inline

References query_name_.

void protocols::task_operations::AlignedThreadOperation::start_res ( core::Size const  s )

inline

References start_res_.

core::Size protocols::task_operations::AlignedThreadOperation::start_res ( ) const

inline

References start_res_.

Referenced by apply(), and parse_tag().

std::string protocols::task_operations::AlignedThreadOperation::template_name ( ) const

inline

References template_name_.

Referenced by apply(), and parse_tag().

void protocols::task_operations::AlignedThreadOperation::template_name ( std::string const &  s )

inline

References template_name_.

Member Data Documentation

std::string protocols::task_operations::AlignedThreadOperation::alignment_file_

private

Referenced by alignment_file().

std::string protocols::task_operations::AlignedThreadOperation::query_name_

private

Referenced by query_name().

core::Size protocols::task_operations::AlignedThreadOperation::start_res_

private

Referenced by start_res().

std::string protocols::task_operations::AlignedThreadOperation::template_name_

private

Referenced by template_name().

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The documentation for this class was generated from the following files:

• src/protocols/task_operations/AlignedThreadOperation.hh
• src/protocols/task_operations/AlignedThreadOperation.cc