| add_chunk_set(std::string const &silent_file, core::pose::ResMap const &res_map, core::pose::Pose const &big_pose) | core::import_pose::libraries::RNA_ChunkLibrary | |
| align_to_chunk(core::pose::Pose &pose, ChunkSet const &chunk_set, core::Size const chunk_index) const | core::import_pose::libraries::RNA_ChunkLibrary | private |
| atom_level_domain_map() const | core::import_pose::libraries::RNA_ChunkLibrary | inline |
| atom_level_domain_map_ | core::import_pose::libraries::RNA_ChunkLibrary | private |
| check_fold_tree_OK(core::pose::Pose const &pose) const | core::import_pose::libraries::RNA_ChunkLibrary | |
| check_fold_tree_OK(core::pose::ResMap const &res_map, core::pose::Pose const &pose, core::pose::Pose const &scratch_pose) | core::import_pose::libraries::RNA_ChunkLibrary | private |
| check_res_map(core::pose::ResMap const &res_map, core::pose::Pose const &scratch_pose, std::string const &sequence) const | core::import_pose::libraries::RNA_ChunkLibrary | private |
| chunk_coverage() const | core::import_pose::libraries::RNA_ChunkLibrary | inline |
| chunk_coverage_ | core::import_pose::libraries::RNA_ChunkLibrary | private |
| chunk_set(Size const n) const | core::import_pose::libraries::RNA_ChunkLibrary | inline |
| chunk_sets() const | core::import_pose::libraries::RNA_ChunkLibrary | inline |
| chunk_sets_ | core::import_pose::libraries::RNA_ChunkLibrary | private |
| clone() const | core::import_pose::libraries::RNA_ChunkLibrary | |
| coarse_rna_ | core::import_pose::libraries::RNA_ChunkLibrary | private |
| covered_by_chunk_ | core::import_pose::libraries::RNA_ChunkLibrary | private |
| do_rosetta_library_domain_check_ | core::import_pose::libraries::RNA_ChunkLibrary | private |
| figure_out_chunk_coverage() | core::import_pose::libraries::RNA_ChunkLibrary | private |
| get_alignment_domain(core::pose::Pose const &pose) const | core::import_pose::libraries::RNA_ChunkLibrary | |
| get_indices_of_moving_chunks() const | core::import_pose::libraries::RNA_ChunkLibrary | |
| initialize_random_chunks(core::pose::Pose &pose, bool const dump_pdb=false) const | core::import_pose::libraries::RNA_ChunkLibrary | |
| initialize_rna_chunk_library(utility::vector1< std::string > const &pdb_files, utility::vector1< std::string > const &silent_files, core::pose::Pose const &pose, utility::vector1< core::Size > const &input_res, utility::vector1< core::Size > const &allow_insert_res=utility::vector1< core::Size >()) | core::import_pose::libraries::RNA_ChunkLibrary | |
| insert_chunk_into_pose(core::pose::Pose &pose, Size const &chunk_list_index, Size const &chunk_pose_index) const | core::import_pose::libraries::RNA_ChunkLibrary | |
| insert_random_protein_chunks(core::pose::Pose &pose) const | core::import_pose::libraries::RNA_ChunkLibrary | |
| num_chunk_sets() const | core::import_pose::libraries::RNA_ChunkLibrary | inline |
| num_chunks(Size const n) const | core::import_pose::libraries::RNA_ChunkLibrary | |
| num_moving_chunks() const | core::import_pose::libraries::RNA_ChunkLibrary | |
| random_chunk_insertion(core::pose::Pose &pose) const | core::import_pose::libraries::RNA_ChunkLibrary | |
| RNA_ChunkLibrary() | core::import_pose::libraries::RNA_ChunkLibrary | |
| RNA_ChunkLibrary(utility::vector1< std::string > const &pdb_files, utility::vector1< std::string > const &silent_files, core::pose::Pose const &pose, utility::vector1< core::Size > const &input_res, utility::vector1< core::Size > const &allow_insert_res=utility::vector1< core::Size >()) | core::import_pose::libraries::RNA_ChunkLibrary | |
| RNA_ChunkLibrary(utility::vector1< std::string > const &silent_files, core::pose::Pose const &pose, utility::vector1< core::Size > const &input_res) | core::import_pose::libraries::RNA_ChunkLibrary | |
| RNA_ChunkLibrary(core::pose::Pose const &pose) | core::import_pose::libraries::RNA_ChunkLibrary | |
| set_atom_level_domain_map(core::pose::toolbox::AtomLevelDomainMapOP atom_level_domain_map) | core::import_pose::libraries::RNA_ChunkLibrary | |
| setup_base_pair_step_chunks(core::pose::Pose const &pose, utility::vector1< core::pose::rna::BasePairStep > const &base_pair_steps, BasePairStepLibrary const &base_pair_step_library) | core::import_pose::libraries::RNA_ChunkLibrary | |
| single_user_input_chunk() const | core::import_pose::libraries::RNA_ChunkLibrary | |
| superimpose_to_single_user_input_chunk(core::pose::Pose &pose) const | core::import_pose::libraries::RNA_ChunkLibrary | |
| update_atom_level_domain_map(core::pose::ResMap const &res_map, core::pose::Pose const &pose, core::pose::Pose const &scratch_pose, Size const domain_num) | core::import_pose::libraries::RNA_ChunkLibrary | private |
| update_to_move_rosetta_library_chunks() | core::import_pose::libraries::RNA_ChunkLibrary | |
| ~RNA_ChunkLibrary() override | core::import_pose::libraries::RNA_ChunkLibrary | |
1.8.7