trRosettaProtocolMover.cc File Reference

The full trRosetta structure prediction protocol from Yang et al, converted to C++ and implemented as a mover. More...

#include <protocols/trRosetta_protocols/movers/trRosettaProtocolMover.hh>
#include <protocols/trRosetta_protocols/movers/trRosettaProtocolMoverCreator.hh>
#include <core/id/AtomID.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/AA.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/select/residue_selector/ResidueIndexSelector.hh>
#include <core/pose/variant_util.hh>
#include <core/scoring/RamaPrePro.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/AngleConstraint.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/simple_metrics/metrics/RMSDMetric.hh>
#include <core/simple_metrics/metrics/TotalEnergyMetric.hh>
#include <core/simple_metrics/metrics/TimingProfileMetric.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <protocols/trRosetta/trRosettaProtocol_v1.hh>
#include <protocols/trRosetta_protocols/constraint_generators/trRosettaConstraintGenerator.hh>
#include <protocols/jd2/util.hh>
#include <protocols/simple_moves/MutateResidue.hh>
#include <protocols/residue_selectors/StoredResidueSubsetSelector.hh>
#include <protocols/residue_selectors/StoreResidueSubsetMover.hh>
#include <protocols/simple_moves/bin_transitions/InitializeByBins.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/moves/RepeatMover.hh>
#include <protocols/relax/FastRelax.hh>
#include <basic/Tracer.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/trRosetta.OptionKeys.gen.hh>
#include <basic/tensorflow_manager/util.hh>
#include <utility/tag/Tag.hh>
#include <utility/pointer/memory.hh>
#include <numeric/random/random.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <utility/vector1.hh>
#include <basic/citation_manager/UnpublishedModuleInfo.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/CitationManager.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::trRosetta_protocols
	protocols::trRosetta_protocols::movers

Functions
static basic::Tracer	TR ("protocols.trRosetta_protocols.movers.trRosettaProtocolMover")
std::ostream &	protocols::trRosetta_protocols::movers::operator<< (std::ostream &os, trRosettaProtocolMover const &mover)
	private methods /// More...

Detailed Description

The full trRosetta structure prediction protocol from Yang et al, converted to C++ and implemented as a mover.

Author

Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org)

Function Documentation

static basic::Tracer TR ( "protocols.trRosetta_protocols.movers.trRosettaProtocolMover"  )

static