#include <RepeatParameterFilter.hh>

Inheritance diagram for protocols::simple_filters::RepeatParameterFilter:

Public Member Functions
	RepeatParameterFilter ()

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

void	report (std::ostream &out, const core::pose::Pose &pose) const override

void	calculate_helical_parameters (core::pose::Pose const &pose, std::string &handedness, core::Real &rise_out, core::Real &radius_out, core::Real &omega_out) const

void	apply_transformation (core::pose::Pose &mod_pose, std::list< core::Size > const &residue_list, numeric::xyzMatrix< core::Real > const &R, numeric::xyzVector< core::Real > const &preT, numeric::xyzVector< core::Real > const &postT) const

void	matrix3f_to_xyzMatrix (Eigen::Matrix3f const &Re, numeric::xyzMatrix< core::Real > &R) const

void	identity_matrix (numeric::xyzMatrix< core::Real > &R) const

void	calculate_helical_parameters_helper (core::pose::Pose const &pose, std::string &handedness, core::Real &rise_out, core::Real &radius_out, core::Real &omega_out) const

filters::FilterOP	clone () const override

filters::FilterOP	fresh_instance () const override

	~RepeatParameterFilter () override

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Size	numb_repeats_

core::Size	startAtRepeat_

std::string	param_type_

core::Real	min_

core::Real	max_

bool	filter_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::simple_filters::RepeatParameterFilter::RepeatParameterFilter ( )

protocols::simple_filters::RepeatParameterFilter::~RepeatParameterFilter ( )

overridedefault

Member Function Documentation

bool protocols::simple_filters::RepeatParameterFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References calculate_helical_parameters(), filter_, max_, min_, core::scoring::omega, and param_type_.

void protocols::simple_filters::RepeatParameterFilter::apply_transformation	(	core::pose::Pose &	mod_pose,
		std::list< core::Size > const &	residue_list,
		numeric::xyzMatrix< core::Real > const &	R,
		numeric::xyzVector< core::Real > const &	preT,
		numeric::xyzVector< core::Real > const &	postT
	)		const

References core::pose::Pose::batch_set_xyz(), core::chemical::ResidueType::natoms(), core::pose::Pose::residue_type(), and core::pose::Pose::xyz().

void protocols::simple_filters::RepeatParameterFilter::calculate_helical_parameters	(	core::pose::Pose const &	pose,
		std::string &	handedness,
		core::Real &	rise_out,
		core::Real &	radius_out,
		core::Real &	omega_out
	)		const

References calculate_helical_parameters_helper(), and core::pose::Pose::clone().

Referenced by apply(), report(), and report_sm().

void protocols::simple_filters::RepeatParameterFilter::calculate_helical_parameters_helper	(	core::pose::Pose const &	pose,
		std::string &	handedness,
		core::Real &	rise_out,
		core::Real &	radius_out,
		core::Real &	omega_out
	)		const