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protocols::stepwise::options::StepWiseBasicOptions Member List

This is the complete list of members for protocols::stepwise::options::StepWiseBasicOptions, including all inherited members.

atr_rep_screen() const protocols::stepwise::options::StepWiseBasicOptionsinline
atr_rep_screen_protocols::stepwise::options::StepWiseBasicOptionsprivate
atr_rep_screen_for_docking() const protocols::stepwise::options::StepWiseBasicOptionsinline
atr_rep_screen_for_docking_protocols::stepwise::options::StepWiseBasicOptionsprivate
boltzmann_choice_post_enumerated_minimize() const protocols::stepwise::options::StepWiseBasicOptionsinline
boltzmann_choice_post_enumerated_minimize_protocols::stepwise::options::StepWiseBasicOptionsprivate
clone() const protocols::stepwise::options::StepWiseBasicOptions
cluster_rmsd() const protocols::stepwise::options::StepWiseBasicOptionsinline
cluster_rmsd_protocols::stepwise::options::StepWiseBasicOptionsprivate
disallow_pack_polar_hydrogens() const protocols::stepwise::options::StepWiseBasicOptionsinline
disallow_pack_polar_hydrogens_protocols::stepwise::options::StepWiseBasicOptionsprivate
hydrate_magnesiums() const protocols::stepwise::options::StepWiseBasicOptionsinline
hydrate_magnesiums_protocols::stepwise::options::StepWiseBasicOptionsprivate
initialize_from_command_line()protocols::stepwise::options::StepWiseBasicOptionsprotected
initialize_from_options_collection(utility::options::OptionCollection const &options)protocols::stepwise::options::StepWiseBasicOptionsprotected
initialize_variables()protocols::stepwise::options::StepWiseBasicOptionsprotected
list_options_read(utility::options::OptionKeyList &opt)protocols::stepwise::options::StepWiseBasicOptionsstatic
lores() const protocols::stepwise::options::StepWiseBasicOptionsinline
lores_protocols::stepwise::options::StepWiseBasicOptionsprivate
mapfile_activated() const protocols::stepwise::options::StepWiseBasicOptionsinline
mapfile_activated_protocols::stepwise::options::StepWiseBasicOptionsprivate
max_tries_multiplier_for_ccd() const protocols::stepwise::options::StepWiseBasicOptionsinline
max_tries_multiplier_for_ccd_protocols::stepwise::options::StepWiseBasicOptionsprivate
min_tolerance() const protocols::stepwise::options::StepWiseBasicOptionsinline
min_tolerance_protocols::stepwise::options::StepWiseBasicOptionsprivate
min_type() const protocols::stepwise::options::StepWiseBasicOptionsinline
min_type_protocols::stepwise::options::StepWiseBasicOptionsprivate
minimize_waters() const protocols::stepwise::options::StepWiseBasicOptionsinline
minimize_waters_protocols::stepwise::options::StepWiseBasicOptionsprivate
minimizer_mode() const protocols::stepwise::options::StepWiseBasicOptionsinline
minimizer_mode_protocols::stepwise::options::StepWiseBasicOptionsprivate
n_cycles() const protocols::stepwise::options::StepWiseBasicOptionsinline
n_cycles_protocols::stepwise::options::StepWiseBasicOptionsprivate
num_pose_minimize() const protocols::stepwise::options::StepWiseBasicOptionsinline
num_pose_minimize_protocols::stepwise::options::StepWiseBasicOptionsprivate
num_random_samples() const protocols::stepwise::options::StepWiseBasicOptionsinline
num_random_samples_protocols::stepwise::options::StepWiseBasicOptionsprivate
output_cluster_size() const protocols::stepwise::options::StepWiseBasicOptionsinline
output_cluster_size_protocols::stepwise::options::StepWiseBasicOptionsprivate
output_minimized_pose_list() const protocols::stepwise::options::StepWiseBasicOptionsinline
output_minimized_pose_list_protocols::stepwise::options::StepWiseBasicOptionsprivate
parse_my_tag(utility::tag::TagCOP)protocols::stepwise::options::StepWiseBasicOptionsinlinevirtual
rmsd_screen() const protocols::stepwise::options::StepWiseBasicOptionsinline
rmsd_screen_protocols::stepwise::options::StepWiseBasicOptionsprivate
sample_pH() const protocols::stepwise::options::StepWiseBasicOptionsinline
sample_pH_protocols::stepwise::options::StepWiseBasicOptionsprivate
sampler_num_pose_kept() const protocols::stepwise::options::StepWiseBasicOptionsinline
sampler_num_pose_kept_protocols::stepwise::options::StepWiseBasicOptionsprivate
sampler_silent_file() const protocols::stepwise::options::StepWiseBasicOptionsinline
sampler_silent_file_protocols::stepwise::options::StepWiseBasicOptionsprivate
set_atr_rep_screen(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_atr_rep_screen_for_docking(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_boltzmann_choice_post_enumerated_minimize(bool const setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_cluster_rmsd(core::Real const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_disallow_pack_polar_hydrogens(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_hydrate_magnesiums(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_lores(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_mapfile_activated(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_max_tries_multiplier_for_ccd(core::Size const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_min_tolerance(core::Real const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_min_type(std::string const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_minimize_waters(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_minimizer_mode(modeler::MinimizerMode const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_n_cycles(core::Size const setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_num_pose_minimize(core::Size const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_num_random_samples(core::Size const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_output_cluster_size(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_output_minimized_pose_list(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_rmsd_screen(core::Real const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_sample_pH(bool const setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_sampler_num_pose_kept(core::Size const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_sampler_silent_file(std::string const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_silent_file(std::string const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_test_all_mg_hydration_frames(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_thermal_sampler_output_min_pose(bool const setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_use_packer_instead_of_rotamer_trials(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_vary_polar_hydrogen_geometry(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_vary_rna_bond_geometry(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_VDW_rep_screen_info(utility::vector1< std::string > const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_verbose_sampler(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
silent_file() const protocols::stepwise::options::StepWiseBasicOptionsinline
silent_file_protocols::stepwise::options::StepWiseBasicOptionsprivate
StepWiseBasicOptions()protocols::stepwise::options::StepWiseBasicOptions
test_all_mg_hydration_frames() const protocols::stepwise::options::StepWiseBasicOptionsinline
test_all_mg_hydration_frames_protocols::stepwise::options::StepWiseBasicOptionsprivate
thermal_sampler_output_min_pose() const protocols::stepwise::options::StepWiseBasicOptionsinline
thermal_sampler_output_min_pose_protocols::stepwise::options::StepWiseBasicOptionsprivate
thermal_sampler_temperature() const protocols::stepwise::options::StepWiseBasicOptionsinline
thermal_sampler_temperature_protocols::stepwise::options::StepWiseBasicOptionsprivate
type() const protocols::stepwise::options::StepWiseBasicOptionsinlinevirtual
use_packer_instead_of_rotamer_trials() const protocols::stepwise::options::StepWiseBasicOptionsinline
use_packer_instead_of_rotamer_trials_protocols::stepwise::options::StepWiseBasicOptionsprivate
vary_polar_hydrogen_geometry() const protocols::stepwise::options::StepWiseBasicOptionsinline
vary_polar_hydrogen_geometry_protocols::stepwise::options::StepWiseBasicOptionsprivate
vary_rna_bond_geometry() const protocols::stepwise::options::StepWiseBasicOptionsinline
vary_rna_bond_geometry_protocols::stepwise::options::StepWiseBasicOptionsprivate
VDW_rep_screen_info() const protocols::stepwise::options::StepWiseBasicOptionsinline
VDW_rep_screen_info_protocols::stepwise::options::StepWiseBasicOptionsprivate
verbose_sampler() const protocols::stepwise::options::StepWiseBasicOptionsinline
verbose_sampler_protocols::stepwise::options::StepWiseBasicOptionsprivate
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