| add_alanine_constraints() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| add_alanine_constraints_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| add_c_terminal_constraints() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| add_c_terminal_constraints_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| add_hydrophobic_constraints() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| add_hydrophobic_constraints_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| add_n_terminal_constraints() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| add_n_terminal_constraints_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| add_overall_constraints() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| add_overall_constraints_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| AddHelixSequenceConstraintsMover() | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| AddHelixSequenceConstraintsMover(AddHelixSequenceConstraintsMover const &src) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| ala_constraint_over_strength() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| ala_constraint_over_strength_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| ala_constraint_under_strength() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| ala_constraint_under_strength_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| apply(core::pose::Pose &pose) override | protocols::aa_composition::AddHelixSequenceConstraintsMover | virtual |
| c_terminal_constraint_strength() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| c_terminal_constraint_strength_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| c_terminus_size() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| c_terminus_size_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| check_lengths_sensible() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::aa_composition::AddHelixSequenceConstraintsMover | virtual |
| create() | protocols::moves::Mover | virtual |
| delete_old_sequence_constraints(core::pose::Pose &pose) const | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| desired_ala_fraction() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| desired_ala_fraction_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| desired_min_hydrophobic_fraction() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| desired_min_hydrophobic_fraction_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| do_overall_or_alanine_constraints(core::pose::Pose &pose, core::Size const start_res, core::Size const end_res, std::string const &constraint_setup) const | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| do_terminal_constraints(core::pose::Pose &pose, bool const n_terminus, core::Size const start_res, core::Size const end_res, std::string const &constraint_setup) const | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| find_helices(core::pose::Pose const &pose, utility::vector1< std::pair< core::Size, core::Size > > &helices) const | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| fresh_instance() const override | protocols::aa_composition::AddHelixSequenceConstraintsMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::aa_composition::AddHelixSequenceConstraintsMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| has_residue_selector() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| hydrophobic_constraint_strength() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| hydrophobic_constraint_strength_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_types_to_avoid() | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| min_c_terminal_charges() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| min_c_terminal_charges_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| min_helix_length() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| min_helix_length_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| min_n_terminal_charges() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| min_n_terminal_charges_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::aa_composition::AddHelixSequenceConstraintsMover | static |
| n_terminal_constraint_strength() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| n_terminal_constraint_strength_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| n_terminus_size() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| n_terminus_size_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| name() | protocols::moves::Mover | inlinestatic |
| overall_constraints_strength() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| overall_constraints_strength_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| overall_max_count() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| overall_max_count_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::aa_composition::AddHelixSequenceConstraintsMover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::aa_composition::AddHelixSequenceConstraintsMover | static |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| remove_unselected_helices(core::pose::Pose const &pose, utility::vector1< std::pair< core::Size, core::Size > > &helices) const | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| reset_mode() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| reset_mode_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| reset_status() | protocols::moves::Mover | |
| residue_selector() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| residue_selector_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| set_add_alanine_constraints(bool const setting) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| set_add_alanine_constraints(bool const setting, core::Real const &desired_ala_fraction, core::Real const &ala_constraint_under_strength, core::Real const &ala_constraint_over_strength) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| set_add_c_terminal_constraints(bool const setting, core::Size const min_charges, core::Size const cterm_size, core::Real const &strength) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| set_add_hydrophobic_constraints(bool const setting) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| set_add_hydrophobic_constraints(bool const setting, core::Real const &desired_min_hydrophobic_fraction, core::Real const &hydrophobic_constraint_strength) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| set_add_n_terminal_constraints(bool const setting, core::Size const min_charges, core::Size const nterm_size, core::Real const &strength) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| set_add_overall_constraints(bool const setting) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| set_add_overall_constraints(bool const setting, std::string const &types_to_avoid, core::Size const overall_max_count, core::Real const &overall_constraints_strength) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_min_helix_length(core::Size const setting) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_reset_mode(bool const setting) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| set_residue_selector(core::select::residue_selector::ResidueSelectorCOP selector_in) | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| set_up_alanine_constraints(std::string &setup_string_out) const | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| set_up_hydrophobic_constraints(std::string &setup_string_out) const | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| set_up_overall_constraints(std::string &setup_string_out) const | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| set_up_terminal_constraints(std::string &setup_string_out, bool const n_terminal) const | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| show(std::ostream &output=std::cout) const override | protocols::aa_composition::AddHelixSequenceConstraintsMover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| types_to_avoid() const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| types_to_avoid(core::Size const index) const | protocols::aa_composition::AddHelixSequenceConstraintsMover | inline |
| types_to_avoid_ | protocols::aa_composition::AddHelixSequenceConstraintsMover | private |
| ~AddHelixSequenceConstraintsMover() override | protocols::aa_composition::AddHelixSequenceConstraintsMover | |
1.8.7