| add_schema(utility::tag::XMLSchemaComplexTypeGeneratorOP complex_schema) | core::simple_metrics::PerResidueRealMetric | static |
| apply(std::string const &out_label, pose::Pose &pose, bool override_existing_data=false) const override | core::simple_metrics::PerResidueRealMetric | virtual |
| core::simple_metrics::SimpleMetric::apply(pose::Pose &pose, std::string const &prefix="", std::string const &suffix="", bool override_existing_data=false) const | core::simple_metrics::SimpleMetric | |
| cached_calculate(pose::Pose const &pose, bool use_cache, std::string prefix="", std::string suffix="", bool fail_on_missing_cache=true, bool use_ref_pose_for_cache=true) const | core::simple_metrics::PerResidueRealMetric | |
| calculate(core::pose::Pose const &pose) const override | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | virtual |
| clone() const override | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | virtual |
| complex_type_generator_for_simple_metric(utility::tag::XMLSchemaDefinition &) | core::simple_metrics::SimpleMetric | static |
| create_atom_id_map(core::pose::Pose const &pose, bool desymmetrize_res_selector=true) const | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| create_atom_id_map(core::pose::Pose const &pose, std::map< core::Size, core::Size > const &residue_map) const | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| desymmetrize_res_selector_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| get_custom_type() const | core::simple_metrics::SimpleMetric | |
| get_final_sm_type() const | core::simple_metrics::SimpleMetric | |
| get_metric_names() const override | core::simple_metrics::PerResidueRealMetric | virtual |
| get_selector() const | core::simple_metrics::PerResidueRealMetric | |
| metric() const override | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | virtual |
| name() const override | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | virtual |
| name_mapping_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| name_static() | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | static |
| operator=(PerResidueRealMetric const &) | core::simple_metrics::PerResidueRealMetric | |
| core::simple_metrics::SimpleMetric::operator=(SimpleMetric const &) | core::simple_metrics::SimpleMetric | |
| override_atom_names_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| parse_base_tag(utility::tag::TagCOP tag) | core::simple_metrics::SimpleMetric | virtual |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | virtual |
| parse_per_residue_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) | core::simple_metrics::PerResidueRealMetric | virtual |
| PerResidueRealMetric() | core::simple_metrics::PerResidueRealMetric | |
| PerResidueRealMetric(PerResidueRealMetric const &other) | core::simple_metrics::PerResidueRealMetric | |
| PerResidueRMSDMetric() | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| PerResidueRMSDMetric(core::pose::PoseCOP ref_pose) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| PerResidueRMSDMetric(PerResidueRMSDMetric const &src) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | core::simple_metrics::SimpleMetric | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | static |
| ref_pose_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| residue_selector_ref_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| residue_selector_super_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| residue_selector_super_ref_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| rmsd_atom_names_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| rmsd_map_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| rmsd_type_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| robust_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| set_comparison_pose(core::pose::PoseCOP ref_pose) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| set_corresponding_atoms_robust(bool robust) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| set_custom_type(std::string const &custom_type) | core::simple_metrics::SimpleMetric | |
| set_desymmetrize_residue_selector(bool desym) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| set_output_as_pdb_nums(bool output_as_pdb_nums) | core::simple_metrics::PerResidueRealMetric | |
| set_residue_mapping(std::map< core::Size, core::Size > const &rmsd_map) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| set_residue_selector(select::residue_selector::ResidueSelectorCOP selector) | core::simple_metrics::PerResidueRealMetric | |
| set_residue_selector_reference(core::select::residue_selector::ResidueSelectorCOP residue_selector) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| set_residue_selector_super(core::select::residue_selector::ResidueSelectorCOP residue_selector) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| set_residue_selector_super_reference(core::select::residue_selector::ResidueSelectorCOP residue_selector) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| set_rmsd_type(scoring::rmsd_atoms rmsd_type) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| set_run_superimpose(bool super) | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| setup_name_mapping() | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| simple_metric_type() const | core::simple_metrics::SimpleMetric | inline |
| SimpleMetric(std::string const &simple_metric_type) | core::simple_metrics::SimpleMetric | |
| SimpleMetric(SimpleMetric const &other) | core::simple_metrics::SimpleMetric | |
| superimpose_ | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | private |
| ~PerResidueRealMetric() override | core::simple_metrics::PerResidueRealMetric | |
| ~PerResidueRMSDMetric() override | core::simple_metrics::per_residue_metrics::PerResidueRMSDMetric | |
| ~SimpleMetric() override | core::simple_metrics::SimpleMetric | |
1.8.7