protocols::fold_from_loops::NubInitioMover Member List

This is the complete list of members for protocols::fold_from_loops::NubInitioMover, including all inherited members.

abinitio_score_	protocols::fold_from_loops::NubInitioMover	private
angle_weight(core::Real value)	protocols::fold_from_loops::NubInitioMover
angle_weight() const	protocols::fold_from_loops::NubInitioMover
apply(core::pose::Pose &pose) override	protocols::fold_from_loops::NubInitioMover	virtual
apply_abinitio(core::pose::Pose &pose)	protocols::fold_from_loops::NubInitioMover	private
bb_movable_selector() const	protocols::fold_from_loops::NubInitioMover
binder_weight(core::Real value)	protocols::fold_from_loops::NubInitioMover
binder_weight() const	protocols::fold_from_loops::NubInitioMover
chi_movable_selector() const	protocols::fold_from_loops::NubInitioMover
clear_info()	protocols::moves::Mover	inlinevirtual
clear_motif_cst() const	protocols::fold_from_loops::NubInitioMover
clear_motif_cst(bool pick)	protocols::fold_from_loops::NubInitioMover
clear_motif_cst_	protocols::fold_from_loops::NubInitioMover	private
clone() const override	protocols::fold_from_loops::NubInitioMover	virtual
context_chain_selector() const	protocols::fold_from_loops::NubInitioMover
correction_weights(core::Real value)	protocols::fold_from_loops::NubInitioMover
correction_weights() const	protocols::fold_from_loops::NubInitioMover
count_contacts(core::pose::Pose &pose) const	protocols::fold_from_loops::NubInitioMover	private
create()	protocols::moves::Mover	virtual
cys_design_selector() const	protocols::fold_from_loops::NubInitioMover
default_clear_motif_cst()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_design()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_disulfides_bb()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_disulfides_side()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_drop_unfolded_pose()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_dump_centroid()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_filter_name()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_filter_scorefxn()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_fullatom_scorefxn()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_max_trials()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_mc_angle_weight()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_mc_binder_weight()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_mc_correction_weights()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_mc_dihedral_weight()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_prefix()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_repack_disulfides()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_residue_type()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_rmsd_include_motif()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_rmsd_include_unconstrained()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_rmsd_threshold()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_sse()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_template_selector()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_use_correction_weights()	protocols::fold_from_loops::NubInitioMover	privatestatic
default_use_cst()	protocols::fold_from_loops::NubInitioMover	privatestatic
design() const	protocols::fold_from_loops::NubInitioMover
design(bool pick)	protocols::fold_from_loops::NubInitioMover
design_	protocols::fold_from_loops::NubInitioMover	private
design_chain_selector() const	protocols::fold_from_loops::NubInitioMover
dihedral_weight(core::Real value)	protocols::fold_from_loops::NubInitioMover
dihedral_weight() const	protocols::fold_from_loops::NubInitioMover
disulfides_bb() const	protocols::fold_from_loops::NubInitioMover
disulfides_bb(bool pick)	protocols::fold_from_loops::NubInitioMover
disulfides_bb_	protocols::fold_from_loops::NubInitioMover	private
disulfides_side() const	protocols::fold_from_loops::NubInitioMover
disulfides_side(core::Real value)	protocols::fold_from_loops::NubInitioMover
disulfides_side_	protocols::fold_from_loops::NubInitioMover	private
drop_unfolded_pose() const	protocols::fold_from_loops::NubInitioMover
drop_unfolded_pose(bool pick)	protocols::fold_from_loops::NubInitioMover
drop_unfolded_pose_	protocols::fold_from_loops::NubInitioMover	private
dump_centroid(core::pose::Pose const &pose, core::scoring::ScoreFunctionOP scorefxn)	protocols::fold_from_loops::NubInitioMover	private
dump_centroid() const	protocols::fold_from_loops::NubInitioMover
dump_centroid(bool pick)	protocols::fold_from_loops::NubInitioMover
dump_centroid_	protocols::fold_from_loops::NubInitioMover	private
filter() const	protocols::fold_from_loops::NubInitioMover
filter(protocols::filters::FilterOP pick)	protocols::fold_from_loops::NubInitioMover
filter_	protocols::fold_from_loops::NubInitioMover	private
filter_defined_	protocols::fold_from_loops::NubInitioMover	private
filter_scorefxn() const	protocols::fold_from_loops::NubInitioMover
filter_scorefxn(core::scoring::ScoreFunctionOP const &scorefxn)	protocols::fold_from_loops::NubInitioMover
filter_scorefxn_	protocols::fold_from_loops::NubInitioMover	private
fragments_id() const	protocols::fold_from_loops::NubInitioMover
fragments_id(std::string const &name)	protocols::fold_from_loops::NubInitioMover
fragments_id_	protocols::fold_from_loops::NubInitioMover	private
fresh_instance() const override	protocols::fold_from_loops::NubInitioMover	virtual
fullatom_scorefxn() const	protocols::fold_from_loops::NubInitioMover
fullatom_scorefxn(core::scoring::ScoreFunctionOP const &scorefxn)	protocols::fold_from_loops::NubInitioMover
fullatom_scorefxn_	protocols::fold_from_loops::NubInitioMover	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::fold_from_loops::NubInitioMover	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_template_pieces(core::pose::Pose const &pose) const	protocols::fold_from_loops::NubInitioMover	private
get_type() const	protocols::moves::Mover	inline
has_alphas_	protocols::fold_from_loops::NubInitioMover	private
has_betas_	protocols::fold_from_loops::NubInitioMover	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
make_template_ranges(core::select::residue_selector::ResidueRanges original) const	protocols::fold_from_loops::NubInitioMover	private
make_unfolded_pose(core::pose::Pose &pose)	protocols::fold_from_loops::NubInitioMover	private
manage_constraints(core::pose::Pose &pose)	protocols::fold_from_loops::NubInitioMover	private
max_trials(core::Size choice)	protocols::fold_from_loops::NubInitioMover
max_trials() const	protocols::fold_from_loops::NubInitioMover
max_trials_	protocols::fold_from_loops::NubInitioMover	private
mc_angle_weight_	protocols::fold_from_loops::NubInitioMover	private
mc_binder_weight_	protocols::fold_from_loops::NubInitioMover	private
mc_correction_weights_	protocols::fold_from_loops::NubInitioMover	private
mc_dihedral_weight_	protocols::fold_from_loops::NubInitioMover	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::fold_from_loops::NubInitioMover	static
name()	protocols::moves::Mover	inlinestatic
nub() const	protocols::fold_from_loops::NubInitioMover
nub(utils::NubOP nub)	protocols::fold_from_loops::NubInitioMover
nub_	protocols::fold_from_loops::NubInitioMover	private
NubInitioMover()	protocols::fold_from_loops::NubInitioMover
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override	protocols::fold_from_loops::NubInitioMover	virtual
Pose typedef	protocols::moves::Mover
pose_name_	protocols::fold_from_loops::NubInitioMover	private
PoseCOP typedef	protocols::moves::Mover
post_process(core::pose::Pose &pose)	protocols::fold_from_loops::NubInitioMover	private
prefix() const	protocols::fold_from_loops::NubInitioMover
prefix(std::string const &prefix)	protocols::fold_from_loops::NubInitioMover
prefix_	protocols::fold_from_loops::NubInitioMover	private
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::fold_from_loops::NubInitioMover	static
refold_pose(core::pose::Pose &pose)	protocols::fold_from_loops::NubInitioMover	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
repack(core::pose::Pose &pose)	protocols::fold_from_loops::NubInitioMover	private
repack_disulfides() const	protocols::fold_from_loops::NubInitioMover
repack_disulfides(bool pick)	protocols::fold_from_loops::NubInitioMover
repack_disulfides_	protocols::fold_from_loops::NubInitioMover	private
repack_minimize_disulfides(core::pose::Pose &pose)	protocols::fold_from_loops::NubInitioMover	private
reset_status()	protocols::moves::Mover
residue_type() const	protocols::fold_from_loops::NubInitioMover
residue_type(std::string pick)	protocols::fold_from_loops::NubInitioMover
residue_type_	protocols::fold_from_loops::NubInitioMover	private
rmsd_include_motif() const	protocols::fold_from_loops::NubInitioMover
rmsd_include_motif(bool pick)	protocols::fold_from_loops::NubInitioMover
rmsd_include_motif_	protocols::fold_from_loops::NubInitioMover	private
rmsd_include_unconstrained() const	protocols::fold_from_loops::NubInitioMover
rmsd_include_unconstrained(bool pick)	protocols::fold_from_loops::NubInitioMover
rmsd_include_unconstrained_	protocols::fold_from_loops::NubInitioMover	private
rmsd_threshold() const	protocols::fold_from_loops::NubInitioMover
rmsd_threshold(core::Real threshold)	protocols::fold_from_loops::NubInitioMover
rmsd_threshold_	protocols::fold_from_loops::NubInitioMover	private
sanity_check(core::pose::Pose const &pose)	protocols::fold_from_loops::NubInitioMover	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
silent_score_file_	protocols::fold_from_loops::NubInitioMover	private
sse() const	protocols::fold_from_loops::NubInitioMover
sse(std::string pick)	protocols::fold_from_loops::NubInitioMover
sse_	protocols::fold_from_loops::NubInitioMover	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
template_insertion_ranges() const	protocols::fold_from_loops::NubInitioMover
template_pose() const	protocols::fold_from_loops::NubInitioMover
template_pose_	protocols::fold_from_loops::NubInitioMover	private
template_rmsd(core::pose::Pose &pose)	protocols::fold_from_loops::NubInitioMover	private
template_selector() const	protocols::fold_from_loops::NubInitioMover
template_selector(core::select::residue_selector::ResidueSelectorCOP const &selector)	protocols::fold_from_loops::NubInitioMover
template_selector_	protocols::fold_from_loops::NubInitioMover	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
trials_	protocols::fold_from_loops::NubInitioMover	private
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
use_correction_weights() const	protocols::fold_from_loops::NubInitioMover
use_correction_weights(bool pick)	protocols::fold_from_loops::NubInitioMover
use_correction_weights_	protocols::fold_from_loops::NubInitioMover	private
use_cst() const	protocols::fold_from_loops::NubInitioMover
use_cst(bool pick)	protocols::fold_from_loops::NubInitioMover
use_cst_	protocols::fold_from_loops::NubInitioMover	private
used_template_ranges(bool terminals=false) const	protocols::fold_from_loops::NubInitioMover
used_template_selector() const	protocols::fold_from_loops::NubInitioMover
work_motif_selector() const	protocols::fold_from_loops::NubInitioMover
work_template_selector() const	protocols::fold_from_loops::NubInitioMover
~NubInitioMover() override	protocols::fold_from_loops::NubInitioMover