| add_cst_files(std::string const &cstfile) | protocols::relax::RelaxProtocolBase | inlineprotected |
| add_residue_labels_back(core::pose::Pose &pose, std::map< core::Size, utility::vector1< std::string > > res_label_map, int symmetry_resid_offset) | protocols::relax::RepeatProteinRelax | |
| apply(core::pose::Pose &pose) override | protocols::relax::RepeatProteinRelax | virtual |
| apply_disulfides(core::pose::Pose &pose) | protocols::relax::RelaxProtocolBase | |
| cartesian() const | protocols::relax::RelaxProtocolBase | inline |
| cartesian(bool newval) | protocols::relax::RelaxProtocolBase | |
| cartesian_ | protocols::relax::RepeatProteinRelax | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::relax::RepeatProteinRelax | inlinevirtual |
| constrain_coords() const | protocols::relax::RelaxProtocolBase | inline |
| constrain_coords(bool constrain_coords) | protocols::relax::RelaxProtocolBase | |
| constrain_relax_segments() const | protocols::relax::RelaxProtocolBase | inline |
| constrain_relax_segments(bool constrain_relax_segments) | protocols::relax::RelaxProtocolBase | |
| constrain_relax_to_native_coords() const | protocols::relax::RelaxProtocolBase | inline |
| constrain_relax_to_native_coords(bool constrain_relax_to_native_coords) | protocols::relax::RelaxProtocolBase | |
| constrain_relax_to_start_coords() const | protocols::relax::RelaxProtocolBase | inline |
| constrain_relax_to_start_coords(bool constrain_relax_to_start_coords) | protocols::relax::RelaxProtocolBase | |
| coord_constrain_sidechains() const | protocols::relax::RelaxProtocolBase | inline |
| coord_constrain_sidechains(bool coord_constrain_sidechains) | protocols::relax::RelaxProtocolBase | |
| create() | protocols::moves::Mover | virtual |
| cst_files(core::Size const i) const | protocols::relax::RelaxProtocolBase | inlineprotected |
| dry_run() const | protocols::relax::RelaxProtocolBase | inline |
| dry_run(bool setting) | protocols::relax::RelaxProtocolBase | |
| fix_omega() const | protocols::relax::RelaxProtocolBase | inlineprotected |
| fix_omega(bool fix_omega) | protocols::relax::RelaxProtocolBase | inlineprotected |
| fresh_instance() const override | protocols::relax::RelaxProtocolBase | inlinevirtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_midpoint_longest_loop(core::pose::Pose const &pose, core::Size const repeat_length) | protocols::relax::RepeatProteinRelax | |
| get_movemap() const | protocols::relax::RelaxProtocolBase | |
| get_movemap() | protocols::relax::RelaxProtocolBase | |
| get_name() const override | protocols::relax::RepeatProteinRelax | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_scorefxn() const | protocols::relax::RelaxProtocolBase | |
| get_scorefxn() | protocols::relax::RelaxProtocolBase | protected |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_task_factory() const | protocols::relax::RelaxProtocolBase | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_movemap(core::pose::Pose const &pose, core::kinematics::MoveMap &movemap) | protocols::relax::RelaxProtocolBase | protected |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| limit_aroma_chi2() const | protocols::relax::RelaxProtocolBase | inlineprotected |
| loop_cutpoint_mode_ | protocols::relax::RepeatProteinRelax | private |
| max_iter() const | protocols::relax::RelaxProtocolBase | inline |
| max_iter(core::Size max_iter) | protocols::relax::RelaxProtocolBase | |
| min_type() const | protocols::relax::RelaxProtocolBase | inline |
| min_type(std::string min_type) | protocols::relax::RelaxProtocolBase | |
| min_type_ | protocols::relax::RepeatProteinRelax | private |
| minimize_ | protocols::relax::RepeatProteinRelax | private |
| minimize_bond_angles() const | protocols::relax::RelaxProtocolBase | inline |
| minimize_bond_angles(bool minimize_bond_angles) | protocols::relax::RelaxProtocolBase | |
| minimize_bond_lengths() const | protocols::relax::RelaxProtocolBase | inline |
| minimize_bond_lengths(bool minimize_bond_lengths) | protocols::relax::RelaxProtocolBase | |
| minimize_bondangle_subset() const | protocols::relax::RelaxProtocolBase | inlineprotected |
| minimize_bondangle_subset(int minimize_bondangle_subset) | protocols::relax::RelaxProtocolBase | inlineprotected |
| minimize_bondlength_subset() const | protocols::relax::RelaxProtocolBase | inlineprotected |
| minimize_bondlength_subset(int minimize_bondlength_subset) | protocols::relax::RelaxProtocolBase | inlineprotected |
| minimize_pose(core::pose::Pose &pose) | protocols::relax::RepeatProteinRelax | |
| modify_symmetry_and_exit_ | protocols::relax::RepeatProteinRelax | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::relax::RepeatProteinRelax | static |
| name() | protocols::moves::Mover | inlinestatic |
| numb_repeats_ | protocols::relax::RepeatProteinRelax | private |
| output_debug_structure(core::pose::Pose &pose, std::string prefix) | protocols::relax::RelaxProtocolBase | protected |
| parent typedef | protocols::relax::RelaxProtocolBase | |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override | protocols::relax::RepeatProteinRelax | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const override | protocols::relax::RelaxProtocolBase | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::relax::RepeatProteinRelax | static |
| ramp_down_constraints() const | protocols::relax::RelaxProtocolBase | inline |
| ramp_down_constraints(bool ramp_down_constraints) | protocols::relax::RelaxProtocolBase | |
| ramp_down_constraints_ | protocols::relax::RepeatProteinRelax | private |
| register_options() | protocols::relax::RelaxProtocolBase | static |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| relax_iterations_ | protocols::relax::RepeatProteinRelax | private |
| relax_pose(core::pose::Pose &pose) | protocols::relax::RepeatProteinRelax | |
| RelaxProtocolBase(core::scoring::ScoreFunctionOP) | protocols::relax::RelaxProtocolBase | |
| RelaxProtocolBase(std::string const &movername="RelaxProtocol") | protocols::relax::RelaxProtocolBase | |
| RelaxProtocolBase(std::string const &movername, core::scoring::ScoreFunctionOP) | protocols::relax::RelaxProtocolBase | |
| remove_symm_ | protocols::relax::RepeatProteinRelax | private |
| RepeatProteinRelax() | protocols::relax::RepeatProteinRelax | |
| reset_status() | protocols::moves::Mover | |
| seal_jumps(core::pose::Pose &pose) | protocols::relax::RepeatProteinRelax | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_default_coordinate_settings() | protocols::relax::RelaxProtocolBase | |
| set_default_minimization_settings() | protocols::relax::RelaxProtocolBase | |
| set_default_movemap() | protocols::relax::RelaxProtocolBase | |
| set_defaults() | protocols::relax::RelaxProtocolBase | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_movemap(core::kinematics::MoveMapOP movemap) | protocols::relax::RelaxProtocolBase | |
| set_movemap_factory(core::select::movemap::MoveMapFactoryOP mm_factory) | protocols::relax::RelaxProtocolBase | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_scorefxn(core::scoring::ScoreFunctionOP scorefxn) | protocols::relax::RelaxProtocolBase | |
| set_task_factory(core::pack::task::TaskFactoryOP task_factory) | protocols::relax::RelaxProtocolBase | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| set_up_constraints(core::pose::Pose &pose, core::kinematics::MoveMap &local_movemap) | protocols::relax::RelaxProtocolBase | protected |
| setup_movemap(core::pose::Pose &pose) | protocols::relax::RepeatProteinRelax | |
| setup_repeat_pose(core::pose::Pose &pose) | protocols::relax::RepeatProteinRelax | |
| setup_repeat_pose_jumping(core::pose::Pose &pose) | protocols::relax::RepeatProteinRelax | |
| setup_repeat_symminfo(core::Size const repeatlen, core::Size const nrepeat, core::Size const base_repeat, bool const with_jumping, core::conformation::symmetry::SymmetryInfo &symminfo) | protocols::relax::RepeatProteinRelax | |
| sfxn_ | protocols::relax::RepeatProteinRelax | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| ~RelaxProtocolBase() override | protocols::relax::RelaxProtocolBase | |
1.8.7