protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric Class Reference

#include <SequenceMetric.hh>

Inheritance diagram for protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric:

Public Member Functions
	SequenceMetric ()
	SequenceMetric (std::string sequence)
	~SequenceMetric () override
platform::Real	distance (SequenceMetric const &other) const
	Just counts number of mutations. Does not align. Might someday use BLOSUM62 to create different weights. More...
platform::Real	distance (ClusterMetric const &other) const override
	Just counts number of mutations. Does not align. Might someday use BLOSUM62 to create different weights. More...
void	analyze (core::pose::Pose const &, core::select::residue_selector::ResidueSelectorCOP selector)
	Store sequence from the pose. More...
void	parse_my_tag (core::pose::Pose const &pose, utility::tag::TagCOP tag, basic::datacache::DataMap &datacache) override
std::string const &	sequence () const
void	set_sequence (std::string setting)
Public Member Functions inherited from protocols::multistage_rosetta_scripts::cluster::ClusterMetric
	ClusterMetric ()
	~ClusterMetric () override

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
std::string	sequence_

Constructor & Destructor Documentation

protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric::SequenceMetric

(

)

protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric::SequenceMetric

(

std::string

sequence

)

protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric::~SequenceMetric ( )

override

Member Function Documentation

void protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric::analyze	(	core::pose::Pose const &	pose,
		core::select::residue_selector::ResidueSelectorCOP	selector
	)

Store sequence from the pose.

References core::pose::Pose::sequence(), and sequence_.

Referenced by parse_my_tag().

platform::Real protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric::distance

(

SequenceMetric const &

other

)

const

Just counts number of mutations. Does not align. Might someday use BLOSUM62 to create different weights.

References sequence(), and sequence_.

Referenced by distance().

platform::Real protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric::distance ( ClusterMetric const &  other ) const

inlineoverridevirtual

Just counts number of mutations. Does not align. Might someday use BLOSUM62 to create different weights.

Implements protocols::multistage_rosetta_scripts::cluster::ClusterMetric.

References distance().

void protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric::parse_my_tag ( core::pose::Pose const &  pose, utility::tag::TagCOP  tag, basic::datacache::DataMap &  datacache  )

overridevirtual

Implements protocols::multistage_rosetta_scripts::cluster::ClusterMetric.

References analyze(), and core::select::residue_selector::get_residue_selector().

void protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References core::select::residue_selector::attributes_for_parse_residue_selector(), and protocols::multistage_rosetta_scripts::cluster::xsd_type_definition_w_attributes().

Referenced by protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetricCreator::provide_xml_schema().

std::string const& protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric::sequence ( ) const

inline

References sequence_.

Referenced by distance().

void protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric::set_sequence ( std::string  setting )

inline

References sequence_.

Member Data Documentation

std::string protocols::multistage_rosetta_scripts::cluster::metrics::SequenceMetric::sequence_

private

Referenced by analyze(), distance(), sequence(), and set_sequence().

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The documentation for this class was generated from the following files:

• src/protocols/multistage_rosetta_scripts/cluster/metrics/SequenceMetric.hh
• src/protocols/multistage_rosetta_scripts/cluster/metrics/SequenceMetric.cc