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Rosetta
2021.16
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Rosetta
2021.16
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This is the complete list of members for protocols::cyclic_peptide::crosslinker::TrigonalPyramidalMetal_Helper, including all inherited members.
| add_angle_constraints(core::pose::Pose &pose, utility::vector1< core::Size > const &res_indices, core::Size const i, core::Size const j) const override | protocols::cyclic_peptide::crosslinker::TrigonalPyramidalMetal_Helper | protectedvirtual |
| add_dihedral_constraints(core::pose::Pose &pose, utility::vector1< core::Size > const &res_indices) const | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | protectedvirtual |
| add_linker_asymmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| add_linker_bonds_asymmetric(core::pose::Pose &pose, utility::vector1< core::Size > const &res_indices, core::Size const linker_index) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| add_linker_bonds_symmetric(core::pose::Pose &pose, core::Size const res1, core::Size const linker_index1, core::Size const linker_index2) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| add_linker_constraints_asymmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| add_linker_constraints_symmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, bool const linker_was_added) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| add_linker_symmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| adds_crosslinker_residue() const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | inlinevirtual |
| check_compatible_symmetry_type() const override | protocols::cyclic_peptide::crosslinker::TrigonalPyramidalMetal_Helper | protectedvirtual |
| check_residue_indices_valid(utility::vector1< core::Size > const &indices, core::pose::Pose const &pose) const override | protocols::cyclic_peptide::crosslinker::TrigonalPyramidalMetal_Helper | protectedvirtual |
| CrosslinkerMoverHelper() | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | |
| CrosslinkerMoverHelper(CrosslinkerMoverHelper const &src) | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | |
| filter_by_constraints_energy(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, bool const symmetric, bool const linker_was_added, core::Real const &filter_multiplier) const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | protectedvirtual |
| filter_by_constraints_energy_asymmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, core::Real const &filter_multiplier) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| filter_by_constraints_energy_symmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, bool const linker_was_added, core::Real const &filter_multiplier) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| filter_by_sidechain_distance_asymmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, core::Real const &filter_multiplier) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| filter_by_sidechain_distance_symmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, core::Real const &filter_multiplier) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| get_linker_index_asymmetric(core::pose::Pose const &pose, utility::vector1< core::Size > const &res_indices) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| get_linker_indices_symmetric(core::pose::Pose const &pose, utility::vector1< core::Size > const &res_indices, utility::vector1< core::Size > &linker_indices) const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | virtual |
| get_sidechain_indices(core::select::residue_selector::ResidueSubset const &selection, utility::vector1< core::Size > &res_indices) const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | virtual |
| helper_adds_linker_residue() const override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | inlinevirtual |
| ideal_bond_length(Metal_HelperBase_Metal const metal_type, Metal_HelperBase_MetalLigand const ligand_type) const override | protocols::cyclic_peptide::crosslinker::TrigonalPyramidalMetal_Helper | protectedvirtual |
| is_allowed_type(core::chemical::ResidueType const &type) const override | protocols::cyclic_peptide::crosslinker::TrigonalPyramidalMetal_Helper | protectedvirtual |
| liganding_atom_from_restype(core::chemical::ResidueType const &restype) const | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | protected |
| Metal_HelperBase(std::string const &metal_name_in="Zn") | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | |
| Metal_HelperBase(Metal_HelperBase const &src) | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | |
| metal_type_enum_from_string(std::string const &metal_type_string) const | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | protected |
| metal_type_string() const | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | |
| metal_type_string_from_enum(Metal_HelperBase_Metal const metal_type) const | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | protected |
| post_relax_round_update_steps(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, bool const whole_structure, bool const symmetric, bool const linker_was_added) const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | virtual |
| pre_relax_round_update_steps(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, bool const whole_structure, bool const symmetric, bool const linker_was_added) const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | virtual |
| selection_is_symmetric(core::select::residue_selector::ResidueSubset const &selection, core::pose::Pose const &pose, core::Size const expected_subunit_count) const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | virtual |
| set_metal_bond_length(core::pose::Pose &pose, core::Size const res_index) const | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | protected |
| set_metal_type_from_name(std::string const &name_in) | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | |
| set_symmetry(char const symm_type_in, core::Size const symm_count_in) | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | |
| symm_count() const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | inlineprotected |
| symm_subunits_expected() const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | |
| symm_type() const | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | inlineprotected |
| TrigonalPyramidalMetal_Helper(std::string const &metal_name_in="Zn") | protocols::cyclic_peptide::crosslinker::TrigonalPyramidalMetal_Helper | |
| TrigonalPyramidalMetal_Helper(TrigonalPyramidalMetal_Helper const &src) | protocols::cyclic_peptide::crosslinker::TrigonalPyramidalMetal_Helper | |
| ~CrosslinkerMoverHelper() override | protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelper | |
| ~Metal_HelperBase() override | protocols::cyclic_peptide::crosslinker::Metal_HelperBase | |
| ~TrigonalPyramidalMetal_Helper() override | protocols::cyclic_peptide::crosslinker::TrigonalPyramidalMetal_Helper |
1.8.7