util.cc File Reference

#include <protocols/stepwise/modeler/rna/phosphate/util.hh>
#include <protocols/stepwise/modeler/rna/phosphate/PhosphateMove.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <core/chemical/rna/util.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/id/TorsionID.hh>
#include <core/id/NamedAtomID.hh>
#include <core/pose/Pose.hh>
#include <core/pose/variant_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <numeric/conversions.hh>
#include <numeric/xyz.functions.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::modeler
	protocols::stepwise::modeler::rna
	protocols::stepwise::modeler::rna::phosphate

Functions
static basic::Tracer	TR ("protocols.stepwise.modeler.rna.phosphate.util")
void	protocols::stepwise::modeler::rna::phosphate::remove_terminal_phosphates (pose::Pose &pose)
void	protocols::stepwise::modeler::rna::phosphate::remove_terminal_phosphates (pose::Pose &pose, utility::vector1< core::Size > const &res_list)
void	protocols::stepwise::modeler::rna::phosphate::position_five_prime_phosphate_SLOW (pose::Pose &pose, core::Size const res)
void	protocols::stepwise::modeler::rna::phosphate::position_five_prime_phosphate (pose::Pose &pose, core::Size const res)
void	protocols::stepwise::modeler::rna::phosphate::copy_over_phosphate_variants (pose::Pose &pose_input, pose::Pose const &reference_pose, utility::vector1< PhosphateMove > const &phosphate_move_list)
void	protocols::stepwise::modeler::rna::phosphate::copy_over_phosphate_variants (pose::Pose &pose_input, pose::Pose const &reference_pose, utility::vector1< core::Size > const &res_list)
core::scoring::ScoreFunctionCOP	protocols::stepwise::modeler::rna::phosphate::get_phosphate_scorefxn ()
core::scoring::ScoreFunctionCOP	protocols::stepwise::modeler::rna::phosphate::get_phosphate_scorefxn (core::scoring::methods::EnergyMethodOptions const &options)

Function Documentation

static basic::Tracer TR ( "protocols.stepwise.modeler.rna.phosphate.util"  )

static