#include <ResidueKinWriter.hh>

Inheritance diagram for core::conformation::ResidueKinWriter:

Public Types
typedef core::Size	Size

Public Member Functions
	ResidueKinWriter ()

	~ResidueKinWriter () override

void	write_kin_header (std::ostream &ostr, core::conformation::Residue const &rsd, core::Size atom_to_center_on=0, core::Size which_kin=1) const
	write the header for the kinemage to center on this residue More...

void	write_rsd_coords (std::ostream &ostr, core::conformation::Residue const &rsd, bool is_instance=false) const
	Write out the coordinates for a particular residue; the kinemage tag is assumed to have been writen already. More...

void	master (std::string const &setting)

void	dominant (bool setting)

void	animate (bool setting)

void	group (bool setting)

void	write_virtual_atoms (bool setting)

void	write_hydrogens (bool setting)
	Calling this function with the setting "true", turns on polar, apolar, and backbone hydrogen writing. Calling this function with the setting "false", turns off polar, apolar, and backbone hydrogen writing. More...

void	write_apolar_hydrogens (bool setting)

void	write_polar_hydrogens (bool setting)

void	write_backbone_hydrogens (bool setting)

Private Attributes
std::string	master_

bool	dominant_

bool	animate_

bool	group_

bool	write_apolar_hydrogens_

bool	write_polar_hydrogens_

bool	write_backbone_hydrogens_

bool	write_virtual_atoms_

Member Typedef Documentation

typedef core::Size core::conformation::ResidueKinWriter::Size

Constructor & Destructor Documentation

core::conformation::ResidueKinWriter::ResidueKinWriter ( )

core::conformation::ResidueKinWriter::~ResidueKinWriter ( )

overridedefault

Member Function Documentation

void core::conformation::ResidueKinWriter::animate ( bool setting )

References animate_.

Referenced by core::conformation::ConformationKinWriter::write_coords().

void core::conformation::ResidueKinWriter::dominant ( bool setting )

References dominant_.

void core::conformation::ResidueKinWriter::group ( bool setting )

References group_.

void core::conformation::ResidueKinWriter::master ( std::string const & setting )

References master_.

void core::conformation::ResidueKinWriter::write_apolar_hydrogens ( bool setting )

References write_apolar_hydrogens_.

Referenced by write_hydrogens().

void core::conformation::ResidueKinWriter::write_backbone_hydrogens ( bool setting )

References write_backbone_hydrogens_.

Referenced by write_hydrogens().

void core::conformation::ResidueKinWriter::write_hydrogens ( bool setting )

Calling this function with the setting "true", turns on polar, apolar, and backbone hydrogen writing. Calling this function with the setting "false", turns off polar, apolar, and backbone hydrogen writing.

References write_apolar_hydrogens(), write_backbone_hydrogens(), and write_polar_hydrogens().

void core::conformation::ResidueKinWriter::write_kin_header	(	std::ostream &	ostr,
		core::conformation::Residue const &	rsd,
		core::Size	atom_to_center_on = `0`,
		core::Size	which_kin = `1`
	)		const

write the header for the kinemage to center on this residue

References core::conformation::Residue::nbr_atom(), core::conformation::write_kinemage_header(), and core::conformation::Residue::xyz().

void core::conformation::ResidueKinWriter::write_polar_hydrogens ( bool setting )

References write_polar_hydrogens_.

Referenced by write_hydrogens().

void core::conformation::ResidueKinWriter::write_rsd_coords	(	std::ostream &	ostr,
		core::conformation::Residue const &	rsd,
		bool	is_instance = `false`
	)		const

Write out the coordinates for a particular residue; the kinemage tag is assumed to have been writen already.

If you're drawing multiple instances of a single rotamer, use the "instance" flag to point to the coordinates already written out in this file. This creates a smaller output file.