protocols::frags::SingleResidueTorsionFragmentLibrary Class Reference

a class for collection of fragments for a single residue position More...

#include <TorsionFragment.hh>

Inheritance diagram for protocols::frags::SingleResidueTorsionFragmentLibrary:

Public Types
typedef core::Real	Real
typedef core::Size	Size

Public Member Functions
	~SingleResidueTorsionFragmentLibrary () override
void	insert_fragment (TorsionFragmentOP fragment)
	insert one piece of fragment in the front More...
void	append_fragment (TorsionFragmentOP fragment)
	append one piece of fragment at the end More...
void	copy_fragments (SingleResidueTorsionFragmentLibrary const &src)
core::Size	size () const
	number of available fragment pieces for this position More...
TorsionFragment const &	operator[] (core::Size const index) const
	overloaded [] operator to get single piece of fragment (actual object, not owning pointers) More...
void	erase (core::Size const index)
	erase a single fragment More...
void	clear ()

Private Attributes
utility::vector1 < TorsionFragmentOP >	fragments_
	a collection of TorsionFragments (by owning pointers) More...

Detailed Description

a class for collection of fragments for a single residue position

essentially a vector of TorsionFragment (owning pointers)

Member Typedef Documentation

typedef core::Real protocols::frags::SingleResidueTorsionFragmentLibrary::Real

typedef core::Size protocols::frags::SingleResidueTorsionFragmentLibrary::Size

Constructor & Destructor Documentation

protocols::frags::SingleResidueTorsionFragmentLibrary::~SingleResidueTorsionFragmentLibrary ( )

overridedefault

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Code duplication alert: TorsionFragment is going to be phased out Please avoid writing any new code using these classes: look in core/fragment/ instead look in /protocols/abinitio/FragmentMover for usage examples

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Member Function Documentation

void protocols::frags::SingleResidueTorsionFragmentLibrary::append_fragment ( TorsionFragmentOP  fragment )

inline

append one piece of fragment at the end

References fragments_.

Referenced by copy_fragments(), protocols::frags::operator>>(), and protocols::frags::TorsionFragmentLibrary::read_file().

void protocols::frags::SingleResidueTorsionFragmentLibrary::clear ( )

inline

References fragments_.

Referenced by protocols::frags::operator>>().

void protocols::frags::SingleResidueTorsionFragmentLibrary::copy_fragments

(

SingleResidueTorsionFragmentLibrary const &

src

)

References append_fragment(), and size().

void protocols::frags::SingleResidueTorsionFragmentLibrary::erase ( core::Size const  index )

inline

erase a single fragment

References fragments_, and size().

void protocols::frags::SingleResidueTorsionFragmentLibrary::insert_fragment ( TorsionFragmentOP  fragment )

inline

insert one piece of fragment in the front

References fragments_.

Referenced by protocols::frags::VallData::get_cheating_frags(), and protocols::frags::VallData::get_frags().

TorsionFragment const& protocols::frags::SingleResidueTorsionFragmentLibrary::operator[] ( core::Size const  index ) const

inline

overloaded [] operator to get single piece of fragment (actual object, not owning pointers)

References fragments_.

core::Size protocols::frags::SingleResidueTorsionFragmentLibrary::size ( ) const

inline

number of available fragment pieces for this position

References fragments_.

Referenced by copy_fragments(), protocols::frags::TorsionFragmentLibrary::derive_from_src_lib(), erase(), and protocols::frags::operator<<().

Member Data Documentation

utility::vector1< TorsionFragmentOP > protocols::frags::SingleResidueTorsionFragmentLibrary::fragments_

private

a collection of TorsionFragments (by owning pointers)

Referenced by append_fragment(), clear(), erase(), insert_fragment(), operator[](), and size().

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The documentation for this class was generated from the following files:

• src/protocols/frags/TorsionFragment.hh
• src/protocols/frags/TorsionFragment.cc