trRosettaConstraintGenerator.cc File Reference

A module that runs a trRosetta neural network on an input multiple sequence alignment and uses the output to apply distance and/or angle constraints to a pose for subsequent structure prediction or refinement. More...

#include <protocols/trRosetta_protocols/constraint_generators/trRosettaConstraintGenerator.hh>
#include <protocols/trRosetta_protocols/constraint_generators/trRosettaConstraintGeneratorCreator.hh>
#include <protocols/constraint_generator/ConstraintGeneratorFactory.hh>
#include <protocols/trRosetta/trRosettaOutputs_v1.hh>
#include <protocols/trRosetta/trRosettaProtocol_v1.hh>
#include <core/id/AtomID.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/constraints/AngleConstraint.hh>
#include <core/scoring/func/SplineFunc.hh>
#include <numeric/constants.hh>
#include <basic/Tracer.hh>
#include <basic/tensorflow_manager/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/trRosetta.OptionKeys.gen.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/UnpublishedModuleInfo.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <utility/pointer/memory.hh>
#include <utility/file/file_sys_util.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::trRosetta_protocols
	protocols::trRosetta_protocols::constraint_generators

Functions
static basic::Tracer	TR ("protocols.trRosetta_protocols.constraint_generators.trRosettaConstraintGenerator")

Detailed Description

A module that runs a trRosetta neural network on an input multiple sequence alignment and uses the output to apply distance and/or angle constraints to a pose for subsequent structure prediction or refinement.

Author

Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org)

Function Documentation

static basic::Tracer TR ( "protocols.trRosetta_protocols.constraint_generators.trRosettaConstraintGenerator"  )

static