#include <MakeRotLibJob.hh>

Inheritance diagram for protocols::make_rot_lib::MakeRotLibJob:

Public Member Functions
	MakeRotLibJob (jd2::InnerJobOP inner_job, core::Size nstruct_index, core::Real omg, utility::vector1< core::Real > const &bbs, utility::vector1< core::Size > const &bb_ids, core::Real eps, MakeRotLibOptionsDataOP mrlod, bool semirotameric)

	~MakeRotLibJob () override=default

core::Real	get_omg () const
	acessors More...

core::Real	get_bb (core::Size i) const

utility::vector1< core::Real >	get_bbs () const

utility::vector1< core::Size >	get_bb_ids () const

core::Real	get_eps () const

MakeRotLibOptionsDataOP	get_options_data () const

bool	get_semirotameric () const

Public Member Functions inherited from protocols::jd2::Job
	Job (InnerJobOP inner_job, core::Size nstruct_index)

	Job (Job const &src)
	Copy constructor. More...

JobOP	copy_without_output () const
	returns a copy of this object whose "output fields" are zeroed out. Used by the JobDistributor in cases where the job fails and must be retried to prevent accumulation of Job state after a failure. This implementation was chosen over a clear_all_output function to prevent mover A from deleting mover B's hard work! You probably should not be trying to call this function. The exception: If you want an intermediate-output pose (not the final pose) to not have the aggregated accessory data in the "real" Job object. More...

JobOP	clone () const
	Return an owning pointer to a copy of this object. More...

	~Job () override

virtual void	show (std::ostream &out) const

InnerJobCOP	inner_job () const
	access to inner-job ... use is discouraged - use sparingly! — DO NOT use my_job->inner_job()->get_pose() INSTEAD use my_job->get_pose() More...

std::string const &	input_tag () const
	return the input tag (a short string, generally) More...

InnerJobOP	inner_job_nonconst ()
	nonconst access is intended only for the JobInputter to load poses into the InnerJob, and the Parser to add constraints, and the JobDistributor to delete completed inputs (recycle memory) More...

core::pose::PoseCOP	get_pose () const
	get_pose : will return More...

void	get_pose (core::pose::Pose &) const
	in-place copy of input pose More...

core::Size	nstruct_index () const

core::Size	nstruct_max () const

void	add_string (std::string const &string_in)
	add an output string More...

void	add_strings (Strings const &)
	add output strings More...

void	add_string_string_pair (std::string const &string1, std::string const &string2)
	add a string/string pair More...

void	add_string_real_pair (std::string const &string_in, core::Real const real_in)
	add a string/real pair More...

void	clear_output ()
	Delete the output strings, string/string pairs, and string/real pairs. More...

Strings &	get_strings ()

StringStringPairs &	get_string_string_pairs ()

StringRealPairs &	get_string_real_pairs ()

Strings::const_iterator	output_strings_begin () const

Strings::const_iterator	output_strings_end () const

StringStringPairs::const_iterator	output_string_string_pairs_begin () const

StringStringPairs::const_iterator	output_string_string_pairs_end () const

StringRealPairs::const_iterator	output_string_real_pairs_begin () const

StringRealPairs::const_iterator	output_string_real_pairs_end () const

Strings	get_strings () const

StringStringPairs	get_string_string_pairs () const

StringRealPairs	get_string_real_pairs () const

void	set_status_prefix (std::string prefix)

std::string const &	status_prefix () const

bool	completed () const

bool	to_do () const

bool	can_be_deleted () const
	Returns true iff this job can be deleted to free up memory. More...

bool	bad () const

core::Size	start_time () const

core::Size	end_time () const

core::Size	elapsed_time () const

std::string	timestamp () const

void	set_completed (bool value=true)

void	set_can_be_deleted (bool value=true)
	Set whether this job can be deleted to free up memory. More...

void	set_bad (bool value=true)

void	start_timing ()

void	end_timing ()

void	add_output_observer (JobOutputterObserverAP an_observer)

void	remove_output_observer (JobOutputterObserverAP old_observer)

void	call_output_observers (core::pose::Pose const &pose)

Private Attributes
core::Real	omg_
	backbone torsion angle values that are unique to this job More...

utility::vector1< core::Real >	bbs_

utility::vector1< core::Size >	bb_ids_

core::Real	eps_

MakeRotLibOptionsDataOP	mrlod_
	access to the options data info that are not unique to this job More...

bool	semirotameric_

Additional Inherited Members
Public Types inherited from protocols::jd2::Job
typedef std::list< std::string >	Strings
	TODO these should be maps rather than lists. More...

typedef std::map< std::string, std::string >	StringStringPairs

typedef std::map< std::string, core::Real >	StringRealPairs

Constructor & Destructor Documentation

protocols::make_rot_lib::MakeRotLibJob::MakeRotLibJob	(	jd2::InnerJobOP	inner_job,
		core::Size	nstruct_index,
		core::Real	omg,
		utility::vector1< core::Real > const &	bbs,
		utility::vector1< core::Size > const &	bb_ids,
		core::Real	eps,
		MakeRotLibOptionsDataOP	mrlod,
		bool	semirotameric
	)

protocols::make_rot_lib::MakeRotLibJob::~MakeRotLibJob ( )

overridedefault

Member Function Documentation

core::Real protocols::make_rot_lib::MakeRotLibJob::get_bb ( core::Size i ) const

inline

References bbs_.

utility::vector1< core::Size > protocols::make_rot_lib::MakeRotLibJob::get_bb_ids ( ) const

inline

References bb_ids_.

utility::vector1< core::Real > protocols::make_rot_lib::MakeRotLibJob::get_bbs ( ) const

inline

References bbs_.

core::Real protocols::make_rot_lib::MakeRotLibJob::get_eps ( ) const

inline

References eps_.

core::Real protocols::make_rot_lib::MakeRotLibJob::get_omg ( ) const

inline

acessors

References omg_.

MakeRotLibOptionsDataOP protocols::make_rot_lib::MakeRotLibJob::get_options_data ( ) const

inline

References mrlod_.

bool protocols::make_rot_lib::MakeRotLibJob::get_semirotameric ( ) const

inline

References semirotameric_.

Member Data Documentation

utility::vector1< core::Size > protocols::make_rot_lib::MakeRotLibJob::bb_ids_

private

Referenced by get_bb_ids().

utility::vector1< core::Real > protocols::make_rot_lib::MakeRotLibJob::bbs_

private

Referenced by get_bb(), and get_bbs().

core::Real protocols::make_rot_lib::MakeRotLibJob::eps_

private

Referenced by get_eps().

MakeRotLibOptionsDataOP protocols::make_rot_lib::MakeRotLibJob::mrlod_

private

access to the options data info that are not unique to this job

Referenced by get_options_data().

core::Real protocols::make_rot_lib::MakeRotLibJob::omg_

private

backbone torsion angle values that are unique to this job

Referenced by get_omg().

bool protocols::make_rot_lib::MakeRotLibJob::semirotameric_

private

Referenced by get_semirotameric().

The documentation for this class was generated from the following files:

src/protocols/make_rot_lib/MakeRotLibJob.hh
src/protocols/make_rot_lib/MakeRotLibJob.cc

Public Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation