FragsToAtomDist.cc File Reference

#include <protocols/noesy_assign/FragsToAtomDist.hh>
#include <protocols/noesy_assign/MethylNames.hh>
#include <protocols/noesy_assign/Exceptions.hh>
#include <protocols/simple_moves/sidechain_moves/JumpRotamerSidechainMover.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/Frame.hh>
#include <core/id/AtomID.hh>
#include <core/id/NamedAtomID.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreType.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/util.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzVector.io.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <utility/string_util.hh>
#include <ObjexxFCL/string.functions.hh>
#include <string>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::noesy_assign

Typedefs
using	protocols::noesy_assign::SizeList = utility::vector1< core::Size >
typedef utility::vector1 < std::pair< std::string, SizeList > >	protocols::noesy_assign::AtomGrps
using	protocols::noesy_assign::GroupList = utility::vector1< AtomGrps >
typedef std::map < core::id::AtomID, FragsToAtomDist::DistanceRecord >	protocols::noesy_assign::InnerMap
typedef std::map < core::id::AtomID, InnerMap >	protocols::noesy_assign::DistanceMap

Functions
static basic::Tracer	tr ("protocols.noesy_assign.FragsToAtomDist")
core::Real	half_adjust (core::Real in)
std::map< core::Real, core::Size >	simple_histogram (utility::vector1< core::Real > samples, core::Size bin_number=20)
std::ostream &	protocols::noesy_assign::operator<< (std::ostream &os, FragsToAtomDist::DistanceRecord const &dr)
std::istream &	protocols::noesy_assign::operator>> (std::istream &is, FragsToAtomDist::DistanceRecord &dr)
void	protocols::noesy_assign::initialize_group_list (GroupList &grp_list, core::pose::Pose const &pose)
void	protocols::noesy_assign::store_distmap_with_namedatoms (FragsToAtomDist::NamedDistanceMap &named_distmap, DistanceMap const &distmap, GroupList const &proton_groups)
void	protocols::noesy_assign::store_distance_snapshot (DistanceMap &distmap, core::pose::Pose const &short_pose, core::Size start, core::Size short_size, GroupList const &grps)

Function Documentation

core::Real half_adjust

(

core::Real

in

)

std::map< core::Real,core::Size > simple_histogram	(	utility::vector1< core::Real >	samples,
		core::Size	bin_number = 20
	)

References core::sequence::end.

Referenced by protocols::noesy_assign::FragsToAtomDist::write_hist_to_stream().

static basic::Tracer tr ( "protocols.noesy_assign.FragsToAtomDist"  )

static

Referenced by protocols::noesy_assign::FragsToAtomDist::compute_average_distances(), and protocols::noesy_assign::initialize_group_list().