| add_bb_clone(Size const base_pos, Size const clone_pos) | core::conformation::symmetry::SymmetryInfo | |
| add_chi_clone(Size const base_pos, Size const clone_pos) | core::conformation::symmetry::SymmetryInfo | |
| add_jump_clone(Size const base_pos, Size const clone_jump, Real const wt) | core::conformation::symmetry::SymmetryInfo | |
| atom_is_independent(AtomID const &id) const | core::conformation::symmetry::SymmetryInfo | |
| AtomID typedef | core::conformation::symmetry::SymmetryInfo | |
| AtomIDs typedef | core::conformation::symmetry::SymmetryInfo | |
| bb_clones(Size const seqpos) const | core::conformation::symmetry::SymmetryInfo | |
| bb_clones_ | core::conformation::symmetry::SymmetryInfo | private |
| bb_follows(Size const seqpos) const | core::conformation::symmetry::SymmetryInfo | |
| bb_follows_ | core::conformation::symmetry::SymmetryInfo | private |
| bb_is_independent(Size const seqpos) const | core::conformation::symmetry::SymmetryInfo | |
| chi_clones(Size const seqpos) const | core::conformation::symmetry::SymmetryInfo | |
| chi_clones_ | core::conformation::symmetry::SymmetryInfo | private |
| chi_follows(Size const seqpos) const | core::conformation::symmetry::SymmetryInfo | |
| chi_follows_ | core::conformation::symmetry::SymmetryInfo | private |
| chi_is_independent(Size const seqpos) const | core::conformation::symmetry::SymmetryInfo | |
| clone() const | core::conformation::symmetry::SymmetryInfo | |
| Clones typedef | core::conformation::symmetry::SymmetryInfo | |
| component_bounds_ | core::conformation::symmetry::SymmetryInfo | private |
| components_ | core::conformation::symmetry::SymmetryInfo | private |
| components_moved_by_jump(std::string const &jname) const | core::conformation::symmetry::SymmetryInfo | private |
| contiguous_monomers() const | core::conformation::symmetry::SymmetryInfo | inline |
| contiguous_monomers_ | core::conformation::symmetry::SymmetryInfo | private |
| dependent_atoms(AtomID const &id) const | core::conformation::symmetry::SymmetryInfo | |
| dependent_dofs(DOF_ID const &id, Conformation const &conf) const | core::conformation::symmetry::SymmetryInfo | |
| dependent_torsions(TorsionID const &id) const | core::conformation::symmetry::SymmetryInfo | |
| deriv_multiply(Size const res1, Size const res2) const | core::conformation::symmetry::SymmetryInfo | |
| DOF_ID typedef | core::conformation::symmetry::SymmetryInfo | |
| DOF_IDs typedef | core::conformation::symmetry::SymmetryInfo | |
| dof_is_independent(DOF_ID const &id, Conformation const &conf) const | core::conformation::symmetry::SymmetryInfo | |
| dofname2jnum_ | core::conformation::symmetry::SymmetryInfo | private |
| dofs_ | core::conformation::symmetry::SymmetryInfo | private |
| empty_list | core::conformation::symmetry::SymmetryInfo | private |
| equivalent_residue_on_subunit(Size subunit_index, Size residue_id) const | core::conformation::symmetry::SymmetryInfo | |
| fa_is_independent(Size const seqpos) const | core::conformation::symmetry::SymmetryInfo | |
| get_asymmetric_seqpos(Size const res) const | core::conformation::symmetry::SymmetryInfo | |
| get_component(Size i) const | core::conformation::symmetry::SymmetryInfo | |
| get_component_bounds() const | core::conformation::symmetry::SymmetryInfo | |
| get_component_bounds(char c) const | core::conformation::symmetry::SymmetryInfo | |
| get_component_lower_bound(char c) const | core::conformation::symmetry::SymmetryInfo | |
| get_component_of_residue(Size ir) const | core::conformation::symmetry::SymmetryInfo | |
| get_component_upper_bound(char c) const | core::conformation::symmetry::SymmetryInfo | |
| get_components() const | core::conformation::symmetry::SymmetryInfo | |
| get_dof_derivative_weight(DOF_ID const &id, Conformation const &conf) const | core::conformation::symmetry::SymmetryInfo | |
| get_dofs() const | core::conformation::symmetry::SymmetryInfo | |
| get_jump_name(Size i) const | core::conformation::symmetry::SymmetryInfo | |
| get_jump_name_to_components() const | core::conformation::symmetry::SymmetryInfo | |
| get_jump_name_to_components(std::string const &jname) const | core::conformation::symmetry::SymmetryInfo | |
| get_jump_name_to_subunits() const | core::conformation::symmetry::SymmetryInfo | |
| get_jump_name_to_subunits(std::string const &jname) const | core::conformation::symmetry::SymmetryInfo | |
| get_jump_num(std::string i) const | core::conformation::symmetry::SymmetryInfo | |
| get_njumps_subunit() const | core::conformation::symmetry::SymmetryInfo | |
| get_nres_subunit() const | core::conformation::symmetry::SymmetryInfo | |
| get_num_components() const | core::conformation::symmetry::SymmetryInfo | |
| get_slide_info() const | core::conformation::symmetry::SymmetryInfo | |
| get_subunit_name_to_component() const | core::conformation::symmetry::SymmetryInfo | |
| get_subunit_name_to_component(std::string const &vname) const | core::conformation::symmetry::SymmetryInfo | |
| get_use_symmetry() const | core::conformation::symmetry::SymmetryInfo | |
| independent_residues() const | core::conformation::symmetry::SymmetryInfo | |
| init_defaults() | core::conformation::symmetry::SymmetryInfo | |
| initialize(Size const nres_monomer, Size const njump_monomer, Size const N, Size const num_virtual, std::map< Size, SymDof > dofs, Size const score_subunit, utility::vector1< Real > score_multiply, SymSlideInfo slide_info, Size const num_interfaces=1, std::string const &type="simple") | core::conformation::symmetry::SymmetryInfo | |
| initialize(Size const nres_monomer, Size const njump_monomer, Size const N, Size const num_virtual, std::map< Size, WtedClones > jump_clones, std::map< Size, SymDof > dofs, Size const score_subunit, utility::vector1< Real > score_multiply, SymSlideInfo slide_info, Size const num_interfaces=1, std::string const &type="simple") | core::conformation::symmetry::SymmetryInfo | |
| interface_number(Size const res1, Size const res2) const | core::conformation::symmetry::SymmetryInfo | |
| interfaces_ | core::conformation::symmetry::SymmetryInfo | private |
| is_asymmetric_seqpos(Size const res) const | core::conformation::symmetry::SymmetryInfo | |
| is_virtual(Size const seqpos) const | core::conformation::symmetry::SymmetryInfo | |
| jname2components_ | core::conformation::symmetry::SymmetryInfo | private |
| jname2subunits_ | core::conformation::symmetry::SymmetryInfo | private |
| jnum2dofname_ | core::conformation::symmetry::SymmetryInfo | private |
| jump_clone_wts_ | core::conformation::symmetry::SymmetryInfo | private |
| jump_clones(Size const base_jump) const | core::conformation::symmetry::SymmetryInfo | |
| jump_clones_ | core::conformation::symmetry::SymmetryInfo | private |
| jump_follows(Size const seqpos) const | core::conformation::symmetry::SymmetryInfo | |
| jump_follows_ | core::conformation::symmetry::SymmetryInfo | private |
| jump_is_independent(Size const seqpos) const | core::conformation::symmetry::SymmetryInfo | |
| last_indep_residue_ | core::conformation::symmetry::SymmetryInfo | private |
| last_independent_residue() const | core::conformation::symmetry::SymmetryInfo | |
| map_symmetric_res_pairs(Size res1, Size res2) const | core::conformation::symmetry::SymmetryInfo | |
| name2component_ | core::conformation::symmetry::SymmetryInfo | private |
| njump_monomer_ | core::conformation::symmetry::SymmetryInfo | private |
| npseudo_ | core::conformation::symmetry::SymmetryInfo | private |
| nres_monomer_ | core::conformation::symmetry::SymmetryInfo | private |
| num_bb_clones() const | core::conformation::symmetry::SymmetryInfo | |
| num_chi_clones() const | core::conformation::symmetry::SymmetryInfo | |
| num_components_ | core::conformation::symmetry::SymmetryInfo | private |
| num_independent_residues() const | core::conformation::symmetry::SymmetryInfo | |
| num_interfaces() const | core::conformation::symmetry::SymmetryInfo | |
| num_jump_clones() const | core::conformation::symmetry::SymmetryInfo | |
| num_slidablejumps() const | core::conformation::symmetry::SymmetryInfo | |
| num_total_residues() const | core::conformation::symmetry::SymmetryInfo | |
| num_total_residues_with_pseudo() const | core::conformation::symmetry::SymmetryInfo | |
| num_total_residues_without_pseudo() const | core::conformation::symmetry::SymmetryInfo | |
| num_virtuals() const | core::conformation::symmetry::SymmetryInfo | |
| num_virtuals(Size const setting) | core::conformation::symmetry::SymmetryInfo | |
| operator<<(std::ostream &s, const SymmetryInfo &symminfo) | core::conformation::symmetry::SymmetryInfo | friend |
| operator>>(std::istream &s, SymmetryInfo &symminfo) | core::conformation::symmetry::SymmetryInfo | friend |
| read_silent_struct(std::string const &filename) | core::conformation::symmetry::SymmetryInfo | |
| reset_score_multiply_to_reasonable_default() | core::conformation::symmetry::SymmetryInfo | |
| resize_asu(Size nres_new) | core::conformation::symmetry::SymmetryInfo | |
| reweight_symm_interactions_ | core::conformation::symmetry::SymmetryInfo | private |
| score_multiply(Size const res1, Size const res2) const | core::conformation::symmetry::SymmetryInfo | |
| score_multiply_ | core::conformation::symmetry::SymmetryInfo | private |
| score_multiply_factor() const | core::conformation::symmetry::SymmetryInfo | |
| score_multiply_factor_ | core::conformation::symmetry::SymmetryInfo | private |
| scoring_subunit_ | core::conformation::symmetry::SymmetryInfo | private |
| set_dofs(std::map< Size, SymDof > const &dofs) | core::conformation::symmetry::SymmetryInfo | |
| set_flat_score_multiply(Size const nres, Size const factor) | core::conformation::symmetry::SymmetryInfo | |
| set_jump_name(Size i, std::string) | core::conformation::symmetry::SymmetryInfo | |
| set_multicomponent_info(Size const &num_components, utility::vector1< char > const &components, std::map< char, std::pair< Size, Size > > const &component_bounds, std::map< std::string, char > const &name2component, std::map< std::string, utility::vector1< char > > const &jname2component, std::map< std::string, utility::vector1< Size > > const &jname2subunits) | core::conformation::symmetry::SymmetryInfo | |
| set_nres_subunit(Size const setting) | core::conformation::symmetry::SymmetryInfo | |
| set_score_multiply(Size const res, Size const factor) | core::conformation::symmetry::SymmetryInfo | |
| set_score_multiply_from_subunit_factors(utility::vector1< Real > const &score_multiply_vector_subunit, Size const nres_subunit, Size const n_subunits) | core::conformation::symmetry::SymmetryInfo | |
| set_use_symmetry(bool setting) | core::conformation::symmetry::SymmetryInfo | |
| slide_info_ | core::conformation::symmetry::SymmetryInfo | private |
| subunit_index(Size const seqpos) const | core::conformation::symmetry::SymmetryInfo | |
| subunits() const | core::conformation::symmetry::SymmetryInfo | |
| subunits_moved_by_jump(std::string const &jname) const | core::conformation::symmetry::SymmetryInfo | private |
| SymmetryInfo() | core::conformation::symmetry::SymmetryInfo | |
| SymmetryInfo(SymmData const &symmdata, Size const nres_subunit, Size const njump_subunit) | core::conformation::symmetry::SymmetryInfo | |
| SymmetryInfo(Size const nres_monomer, Size const njump_monomer, Size const N, std::map< Size, SymDof > dofs, Size const score_subunit, utility::vector1< Real > score_multiply, SymSlideInfo slide_info, Size const num_interfaces=1, std::string const &type="simple") | core::conformation::symmetry::SymmetryInfo | |
| torsion_changes_move_other_monomers() const | core::conformation::symmetry::SymmetryInfo | inline |
| torsion_changes_move_other_monomers(bool const setting) | core::conformation::symmetry::SymmetryInfo | inline |
| torsion_changes_move_other_monomers_ | core::conformation::symmetry::SymmetryInfo | private |
| torsion_is_independent(TorsionID const &id) const | core::conformation::symmetry::SymmetryInfo | |
| TorsionID typedef | core::conformation::symmetry::SymmetryInfo | |
| TorsionIDs typedef | core::conformation::symmetry::SymmetryInfo | |
| type_ | core::conformation::symmetry::SymmetryInfo | private |
| update_contiguous_monomers() | core::conformation::symmetry::SymmetryInfo | private |
| update_nmonomer_jumps(Size nmonomer_new) | core::conformation::symmetry::SymmetryInfo | |
| update_score_multiply_factor() | core::conformation::symmetry::SymmetryInfo | |
| use_symmetry_ | core::conformation::symmetry::SymmetryInfo | private |
| write_silent_struct(std::string const &filename) | core::conformation::symmetry::SymmetryInfo | |
| WtedClones typedef | core::conformation::symmetry::SymmetryInfo | |
| ~SymmetryInfo() override | core::conformation::symmetry::SymmetryInfo | |
1.8.7