| align_multipole_axes(pose::Pose &pose) const | core::scoring::MultipoleElecPotential | |
| align_residue_multipole_axes(core::pose::Pose const &pose, Residue const &rsd, MultipoleElecResidueInfo &mp) const | core::scoring::MultipoleElecPotential | |
| amoeba_type_lookup(std::string const &atomname, std::string const &resname, std::string const &variantname, std::string const &variantname2) const | core::scoring::MultipoleElecPotential | |
| assign_all_amoeba_types(pose::Pose &pose) const | core::scoring::MultipoleElecPotential | |
| assign_residue_amoeba_type(Residue const &rsd, MultipoleElecResidueInfo &mp) const | core::scoring::MultipoleElecPotential | |
| bohr | core::scoring::MultipoleElecPotential | private |
| build_frame_and_rotate(core::pose::Pose const &pose, MultipoleParameterOP &mp_param, Size orig_atom, MultipoleElecResidueInfo &mp, core::conformation::Residue const &rsd) const | core::scoring::MultipoleElecPotential | |
| cached_atom_derivs_ | core::scoring::MultipoleElecPotential | mutableprivate |
| calculate_and_store_all_derivs(pose::Pose const &pose) const | core::scoring::MultipoleElecPotential | |
| calculate_fixed_fields_for_polarization(pose::Pose &pose) const | core::scoring::MultipoleElecPotential | |
| calculate_induced_fields_for_polarization(pose::Pose &pose) const | core::scoring::MultipoleElecPotential | |
| calculate_res_res_fixed_fields_for_polarization(Residue const &rsd1, MultipoleElecResidueInfo &mp1, Residue const &rsd2, MultipoleElecResidueInfo &mp2) const | core::scoring::MultipoleElecPotential | |
| calculate_res_res_induced_fields_for_polarization(Residue const &rsd1, MultipoleElecResidueInfo &mp1, Residue const &rsd2, MultipoleElecResidueInfo &mp2) const | core::scoring::MultipoleElecPotential | |
| clear_induced_fields(pose::Pose &pose) const | core::scoring::MultipoleElecPotential | |
| default_variant_ | core::scoring::MultipoleElecPotential | private |
| determine_polarization_groups(pose::Pose &pose) const | core::scoring::MultipoleElecPotential | |
| Ep | core::scoring::MultipoleElecPotential | private |
| eval_residue_pair_derivatives(conformation::Residue const &rsd1, conformation::Residue const &rsd2, MultipoleElecResidueInfo const &mp1, MultipoleElecResidueInfo const &mp2, pose::Pose const &pose, Real const &factor, utility::vector1< DerivVectorPair > &r1_atom_derivs, utility::vector1< DerivVectorPair > &r2_atom_derivs) const | core::scoring::MultipoleElecPotential | |
| Ew | core::scoring::MultipoleElecPotential | private |
| find_params_and_neighbors(core::pose::Pose const &pose, MultipoleParameterOP &mp_param, MultipoleElecResidueInfo &mp, core::conformation::Residue const &rsd, Size const j, Size const this_type) const | core::scoring::MultipoleElecPotential | |
| get_effective_radii(pose::Pose &pose) const | core::scoring::MultipoleElecPotential | |
| get_polarization_from_fields(pose::Pose &pose) const | core::scoring::MultipoleElecPotential | |
| get_res_res_elecE(Residue const &rsd1, MultipoleElecResidueInfo const &mp1, Residue const &rsd2, MultipoleElecResidueInfo const &mp2) const | core::scoring::MultipoleElecPotential | |
| get_rotamers_effective_radii(pose::Pose const &pose, conformation::RotamerSetBase &) const | core::scoring::MultipoleElecPotential | |
| get_rotamers_multipole_info(pose::Pose const &pose, conformation::RotamerSetBase &) const | core::scoring::MultipoleElecPotential | |
| get_single_rotamer_effective_radii(Residue const &rsd1, pose::Pose const &pose, MultipoleElecPoseInfoCOP mp_info, MultipoleElecResidueInfo &mp1) const | core::scoring::MultipoleElecPotential | |
| induce_polarizable_dipoles(pose::Pose &pose) const | core::scoring::MultipoleElecPotential | |
| multipole_info_ | core::scoring::MultipoleElecPotential | private |
| MultipoleElecPotential() | core::scoring::MultipoleElecPotential | inline |
| MultipoleElecPotential(methods::EnergyMethodOptions const &options) | core::scoring::MultipoleElecPotential | |
| read_in_amoeba_parameters() | core::scoring::MultipoleElecPotential | |
| read_in_multipole_parameters() | core::scoring::MultipoleElecPotential | |
| relax_induced_dipoles(pose::Pose &pose, Real relax) const | core::scoring::MultipoleElecPotential | |
| Residue typedef | core::scoring::MultipoleElecPotential | |
| setup_for_packing(pose::Pose &pose, utility::vector1< bool > const &repacking_residues) const | core::scoring::MultipoleElecPotential | |
| setup_for_scoring(pose::Pose &pose) const | core::scoring::MultipoleElecPotential | |
| store_induced_dipoles(pose::Pose &pose) const | core::scoring::MultipoleElecPotential | |
| type_lookup_ | core::scoring::MultipoleElecPotential | private |
| update_residue_for_packing(pose::Pose &pose, Size const seqpos) const | core::scoring::MultipoleElecPotential | |
| use_gen_kirkwood | core::scoring::MultipoleElecPotential | private |
| use_polarization | core::scoring::MultipoleElecPotential | private |
1.8.7