protocols::ligand_docking::Transform Member List

This is the complete list of members for protocols::ligand_docking::Transform, including all inherited members.

apply(core::pose::Pose &pose) override	protocols::ligand_docking::Transform	virtual
change_conformer(core::conformation::UltraLightResidue &residue)	protocols::ligand_docking::Transform
check_conformers(core::conformation::UltraLightResidue &starting_residue) const	protocols::ligand_docking::Transform
check_grid(core::conformation::UltraLightResidue &ligand_residue, core::Real distance=0)	protocols::ligand_docking::Transform
check_rmsd(core::conformation::UltraLightResidue const &start, core::conformation::UltraLightResidue const &current) const	protocols::ligand_docking::Transform
check_rmsd_	protocols::ligand_docking::Transform	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::ligand_docking::Transform	virtual
convert_to_full_pose(core::pose::Pose &pose, core::conformation::UltraLightResidue &residue, core::Size chain_id)	protocols::ligand_docking::Transform
create()	protocols::moves::Mover	virtual
cst_fa_file_	protocols::ligand_docking::Transform	private
cst_fa_weight_	protocols::ligand_docking::Transform	private
dump_conformer(core::conformation::UltraLightResidue &residue, utility::io::ozstream &output)	protocols::ligand_docking::Transform
ensemble_proteins_	protocols::ligand_docking::Transform	private
estimate_mc_travel(core::Real success_rate=-1) const	protocols::ligand_docking::Transform	private
fresh_instance() const override	protocols::ligand_docking::Transform	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::ligand_docking::Transform	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
grid_set_poses_	protocols::ligand_docking::Transform	private
grid_set_prototype_	protocols::ligand_docking::Transform	private
grid_sets_	protocols::ligand_docking::Transform	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
initial_angle_perturb_	protocols::ligand_docking::Transform	private
initial_perturb_	protocols::ligand_docking::Transform	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
ligand_conformers_	protocols::ligand_docking::Transform	private
make_multi_pose_grids(core::Vector center)	protocols::ligand_docking::Transform
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::ligand_docking::Transform	static
name()	protocols::moves::Mover	inlinestatic
optimize_until_score_is_negative_	protocols::ligand_docking::Transform	private
output_sampled_space_	protocols::ligand_docking::Transform	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data_map) override	protocols::ligand_docking::Transform	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const override	protocols::ligand_docking::Transform	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::ligand_docking::Transform	static
randomize_ligand(core::conformation::UltraLightResidue &residue, core::Real distance, core::Real angle)	protocols::ligand_docking::Transform
recommended_box_size(core::Real success_rate=-1) const	protocols::ligand_docking::Transform
recommended_grid_size(core::Real success_rate=-1) const	protocols::ligand_docking::Transform
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
sampled_space_file_	protocols::ligand_docking::Transform	private
score_constraints(core::pose::Pose &pose, core::conformation::UltraLightResidue &residue, core::scoring::ScoreFunctionOP &sfxn)	protocols::ligand_docking::Transform
score_ligand(core::conformation::UltraLightResidue &ligand_residue)	protocols::ligand_docking::Transform
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_conformers(core::pose::Pose &pose, core::Size begin)	protocols::ligand_docking::Transform
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
Transform()	protocols::ligand_docking::Transform
Transform(qsar::scoring_grid::GridSetCOP grid_prototype, std::string const &chain, core::Real const &box_size, core::Real const &move_distance, core::Real const &angle, core::Size const &cycles, core::Real const &temp)	protocols::ligand_docking::Transform
Transform(Transform const &other)	protocols::ligand_docking::Transform
transform_info_	protocols::ligand_docking::Transform	private
transform_ligand(core::conformation::UltraLightResidue &residue)	protocols::ligand_docking::Transform
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
use_conformers_	protocols::ligand_docking::Transform	private
use_constraints_	protocols::ligand_docking::Transform	private
use_main_model_	protocols::ligand_docking::Transform	private
~Transform() override	protocols::ligand_docking::Transform