#include <RuntimeFeatures.hh>

Inheritance diagram for protocols::features::RuntimeFeatures:

Public Member Functions
	RuntimeFeatures ()
	Default constructor. More...

	~RuntimeFeatures () override
	Default destructor. More...

utility::vector1< std::string >	features_reporter_dependencies () const override

void	write_schema_to_db (utility::sql_database::sessionOP db_session) const override
	Define the schema and write it to the database. This is most easily achieved using the schema_generator. Once everything has converted to the schema generator this should be made a pure virtual. More...

core::Size	report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session) override
	Report runtime information for the current job. More...

std::string	type_name () const override

Public Member Functions inherited from protocols::features::FeaturesReporter
	FeaturesReporter ()

	~FeaturesReporter () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

core::Size	report_features (core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &)

virtual void	load_into_pose (utility::sql_database::sessionOP, StructureID, core::pose::Pose &)

virtual void	delete_record (StructureID, utility::sql_database::sessionOP)

void	set_relevant_residues_mode (RelevantResiduesMode::T setting)

RelevantResiduesMode::T	get_relevant_residues_mode () const

bool	check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1) const

bool	check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const

bool	check_relevant_residues_range (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const

bool	check_relevant_residues (utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Protected Attributes inherited from protocols::features::FeaturesReporter
RelevantResiduesMode::T	relevant_residues_mode_

Constructor & Destructor Documentation

protocols::features::RuntimeFeatures::RuntimeFeatures ( )

default

Default constructor.

protocols::features::RuntimeFeatures::~RuntimeFeatures ( )

overridedefault

Default destructor.

Member Function Documentation

std::string protocols::features::RuntimeFeatures::class_name ( )

static

vector1< string > protocols::features::RuntimeFeatures::features_reporter_dependencies ( ) const

overridevirtual

The runtime features links to a structure ID, so the StructureFeatures reporter must also be present.

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::RuntimeFeatures::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References protocols::features::xsd_type_definition_w_attributes().

Size protocols::features::RuntimeFeatures::report_features	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	relevant_residues,
		StructureID	struct_id,
		utility::sql_database::sessionOP	db_session
	)

overridevirtual

Report runtime information for the current job.

Implements protocols::features::FeaturesReporter.

References protocols::jd2::JobDistributor::current_job(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::jd2_used().

std::string protocols::features::RuntimeFeatures::type_name ( ) const

overridevirtual

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::RuntimeFeatures::write_schema_to_db ( utility::sql_database::sessionOP db_session ) const

overridevirtual

Define the schema and write it to the database. This is most easily achieved using the schema_generator. Once everything has converted to the schema generator this should be made a pure virtual.

Implements protocols::features::FeaturesReporter.

The documentation for this class was generated from the following files:

src/protocols/features/RuntimeFeatures.hh
src/protocols/features/RuntimeFeatures.cc

Public Member Functions

Static Public Member Functions

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation